Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01782 ATGGCACTCAAGGCTGCCTCAGGTTCTATACCGAGTGCAGACACAAGTAGTGCCGATAAGGAGGAAGAAAAGTCTGAGACATATAGTCATAGCATGACAGAAGCCATGGGTGCTGTTTTGACTTATAGGCATGAATTAGGAATGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGACTCCTGAAGATGTAGACAAGTTGTGTAGAATTGGAGTGAAAACTATATTTTGCTTACAACAAGATCCAGACCTTGAATATTTCGGAGTTGATATTAATGCCATACGAGAATATGCCAAGACATGCAATGACATTCAACACTTGCGTGCGGAGATAAGGGACTTTGATGCATTTGATCTACGGAGGCGGCTTCCAGTTGTAGTTAGCAAATTATACAAGGCAATAAATTCCAATGGAGGTGTAACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCGTTGGCTTATATGTTTTGGGTTTTGGGTTATAAACTTAACGAGGCTCATACACTACTTCAGAGCAAAAGGTCATGCTTTCCAAAACTGGATGCCATTAAAAGTGCAACAGCTGATATTCTTACAGGCCTCAGTAAGAAGTCTGTCACTTTGTCATGGGAAGGCAGCAATTGCTCTACCGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAGAGAATACCCCTAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCTGAAGGACTCTATGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAATACAGATGAGCTTGTAACCTCTCCCAACAAAGATGGCCATGTCAACAATTTTATTCAAGTCCTTGATGATACAAACAGAGTCCGTGCCTCCCTTCGGGAGAGATTGACCGGTGATGATCCTGATCTCACAACAGATGAACGACTGAGAATAAAGGAGTTTCTTGAAGCTTGTCCTGATGAGGATTAG 993 0.423 MALKAASGSIPSADTSSADKEEEKSETYSHSMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLCRIGVKTIFCLQQDPDLEYFGVDINAIREYAKTCNDIQHLRAEIRDFDAFDLRRRLPVVVSKLYKAINSNGGVTYIHCTAGLGRAPAVALAYMFWVLGYKLNEAHTLLQSKRSCFPKLDAIKSATADILTGLSKKSVTLSWEGSNCSTVEISGLDIGWGQRIPLNFDDKEGLWFLKRELPEGLYEYKYIVDGEWTCNTDELVTSPNKDGHVNNFIQVLDDTNRVRASLRERLTGDDPDLTTDERLRIKEFLEACPDED 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01782 330 CDD DSP_laforin-like 48 195 IPR045204 GO:0019203|GO:0046838
Gma20g01782 330 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 2 329 IPR030079 GO:0005982|GO:0007623|GO:0019203
Gma20g01782 330 MobiDBLite consensus disorder prediction 1 30 - -
Gma20g01782 330 CDD E_set_AMPKbeta_like_N 208 289 - -
Gma20g01782 330 Pfam Dual specificity phosphatase, catalytic domain 92 187 IPR000340 GO:0008138|GO:0016311
Gma20g01782 330 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 46 191 IPR029021 -
Gma20g01782 330 ProSiteProfiles Dual specificity protein phosphatase domain profile. 49 206 IPR020422 GO:0006470|GO:0008138
Gma20g01782 330 Gene3D Protein tyrosine phosphatase superfamily 42 322 IPR029021 -
Gma20g01782 330 SUPERFAMILY E set domains 208 290 IPR014756 -
Gma20g01782 330 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 2 329 - -
Gma20g01782 330 Gene3D Immunoglobulins 204 294 IPR013783 -
Gma20g01782 330 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 126 184 IPR000387 GO:0016311|GO:0016791
Gma20g01782 330 SMART dsp_5 49 199 IPR020422 GO:0006470|GO:0008138
Gma20g01782 330 Pfam Glycogen recognition site of AMP-activated protein kinase 209 291 IPR032640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01782 Gma-Chr20 45181069 45188407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01782 48 330 Protein tyrosine phosphatase (PTP) family AT3G52180 69.965 2.39e-151 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01782 - - gmx:100804010 667.537