Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01780 ATGGGTGAGATTCAAGAGAGCAAGGCTCTTGCAAAGAGCAAGCCTTCCACTGAACAGGACGTTACTGATGAGCTAGACCTAAGAATGAAGAAGTATCTCAGAGGAGAAGGTGCTAATTTGGAGGGTTTGAAGGATAAAAAGCTGAAGGGTCAACTAGCTGTTAAGGAAGACTTATATGGAAAATCTGCAAAAGCTGCTGCTAAGGCTGAGAAGTGGCTTATGCCCAGTGAAGGAGGCTATCTGGAGGCCGAAGGCTTGGAGAAGACATGGAGGATCAAACAGGAGGCAATAGCTCGTGAAGTAGATATCTCAAGCTCAGGAAAACAATATGATATTATTTTACCAGAACTTGGTCCATACACTCTGGATTTTACTTCAAGTGGTCGGTATATGGCTGTGAGTGGTCGTAAGGGCCATCTGGGGATTGTGGACATGATAAATCTGAGCCTAATCAGAGAGTTTCAGGTAAGGGAAACAGTGCGTGATGTCGCATTCTTGCATAATGAGCTCTTTTTTGTTGCTGCTCAGAAAAAGTATCCATACATCTACAATCGAGAAGGCACAGAACTTCACTGTCTCAAGGAACATGGTCCAGTGTTAAGGCTTCAGTTTCTGGAAAACCATTTTCTCTTGGCTTCAATCAACAAGTTTGGACAACTTCGTTATCAGGATGTTACAATGGGTTCCATGGTTGGTAATTTTCGAACTGGCTTAGGACGTACAAATGTAATGCAAGTGAACCCCTTCAATGGGGTTGTTTCTTTAGGTCACTCAGGTGGTACTGTTACCATGTGGAAGCCAACCAGTGCTTCTCCTCTTGTCAAGATGTTATGTCATCATGGGCCTGTCTCAGCACTGGCATTTCATTCAAATGGCCACTTGATGGCCACTGCTGGGAAAGATAAAAAAATTAAGCTTTGGGACTTAAGGAAATTTGAGGTTCTTCAAACCTTACCAGGTCATGCAACTACTCTGGATTTTAGTCAAAAAGGCTTGCTTGCATGCGGTAATGGTTCATTGATCCAGGTTCTGCGTGATGTTTCTGGCACACAAAATTATTCTAAGTATATGACTCATTCCATGGTGAAAGGTTACCAGATAGGAAAATTGGTATTTCGACCATATGAAGATGTTCTAGGCATCGGGCATTCCATGGGCTGGTCTAGTATTCTTATTCCAGGAGCAGGAGAACCCAACTTTGACTCATGGGTTGCAAACCCATTTGAAACTTCTAAACAGAGGAGAGAAAAGGAAATACGGTCTCTTCTTGATAAGCTTCCACCTGAGACTATCATGCTGGATCCCAGCAAGATTGGTACGGTGAAACCAAGAAGAGAGAAGCCAACAAAGCAAGAGAGGGAGGCTGAAATAGAAGCTGACGTTGAAGCGGCTAAGGGCAAGAAACTGAAGAAGAAGACAAAAGGAAGAAACAAGCCAGGTAAAAGGGTACAGAAAAAGCAAGAGGCAGTTGCTAGAGTGAAGAGGCCCTACTTGGAGCAGAAAATTCAAGAAGAGGAAAGCATATCAAGAAAGAAGCAGAAGACTAGGGAGGGTGTTGAACTACCAAAATCTCTACAGCGGTTTGTTCGTAAAAAGGCTTCATCATGA 1608 0.4328 MGEIQESKALAKSKPSTEQDVTDELDLRMKKYLRGEGANLEGLKDKKLKGQLAVKEDLYGKSAKAAAKAEKWLMPSEGGYLEAEGLEKTWRIKQEAIAREVDISSSGKQYDIILPELGPYTLDFTSSGRYMAVSGRKGHLGIVDMINLSLIREFQVRETVRDVAFLHNELFFVAAQKKYPYIYNREGTELHCLKEHGPVLRLQFLENHFLLASINKFGQLRYQDVTMGSMVGNFRTGLGRTNVMQVNPFNGVVSLGHSGGTVTMWKPTSASPLVKMLCHHGPVSALAFHSNGHLMATAGKDKKIKLWDLRKFEVLQTLPGHATTLDFSQKGLLACGNGSLIQVLRDVSGTQNYSKYMTHSMVKGYQIGKLVFRPYEDVLGIGHSMGWSSILIPGAGEPNFDSWVANPFETSKQRREKEIRSLLDKLPPETIMLDPSKIGTVKPRREKPTKQEREAEIEADVEAAKGKKLKKKTKGRNKPGKRVQKKQEAVARVKRPYLEQKIQEEESISRKKQKTREGVELPKSLQRFVRKKASS 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01780 535 Pfam BING4CT (NUC141) domain 356 434 IPR012952 -
Gma20g01780 535 PANTHER WD-REPEAT PROTEIN BING4 10 531 IPR040315 -
Gma20g01780 535 MobiDBLite consensus disorder prediction 440 467 - -
Gma20g01780 535 SMART BING4CT_2 355 435 IPR012952 -
Gma20g01780 535 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 310 - -
Gma20g01780 535 MobiDBLite consensus disorder prediction 1 23 - -
Gma20g01780 535 PANTHER BNAANNG36350D PROTEIN 10 531 - -
Gma20g01780 535 MobiDBLite consensus disorder prediction 440 535 - -
Gma20g01780 535 Gene3D - 90 237 IPR015943 GO:0005515
Gma20g01780 535 SUPERFAMILY WD40 repeat-like 116 382 IPR036322 GO:0005515
Gma20g01780 535 Gene3D - 238 354 IPR015943 GO:0005515
Gma20g01780 535 Pfam WD domain, G-beta repeat 277 308 IPR001680 GO:0005515
Gma20g01780 535 ProSitePatterns Trp-Asp (WD) repeats signature. 295 309 IPR019775 -
Gma20g01780 535 SMART WD40_4 227 266 IPR001680 GO:0005515
Gma20g01780 535 SMART WD40_4 106 144 IPR001680 GO:0005515
Gma20g01780 535 SMART WD40_4 269 308 IPR001680 GO:0005515
Gma20g01780 535 SMART WD40_4 311 345 IPR001680 GO:0005515
Gma20g01780 535 SMART WD40_4 147 184 IPR001680 GO:0005515
Gma20g01780 535 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 317 IPR001680 GO:0005515
Gma20g01780 535 MobiDBLite consensus disorder prediction 482 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01780 Gma-Chr20 45161203 45167530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01780 160 331 U-box Gene Family AT2G33340 25.683 1.19e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01780 K14768 - gmx:100802940 1037.33