Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01770 ATGGATATGCCGATGAACCGCGCCACTCGAACAACGTCTCTCAGAGACGCCTCCGACTCCTCTAAGTTGGAAGGTACCGGTAGCTGGGACGCCATCGAATGGACCAAGATTGAGCCGCCAATTTCGCGCTTCGTCTCGCACGCCAATCTCGATTTCTTACTCGAGTCGGAGCTAGTTGCAGCCGAAGGAAATGGTGTTGTTCTTGTTAATACAGATGATGCGGGCACGCTGATGGTAACCAATTTTCGTCTTATTTTTCTGAGCGAGGGAACTAGAAAAGTTATTGCCCTTGGAACAATACCTTTAGCAACCATTGAGAAGTTTATCAAGCCAGCTGTAAAGGTTCAGTCAAATACTCGCCATGTAGACAAGACACCAGCACAGAGACTGCTCCAGGTGATTGGAAAAGATATGAGAATTTTAGTCTTCAGTTTCAGGCCACGTACAAAACAGAGACATGTGGTATACGATGCGCTACTGAGGTGTACAAAGCCAACAAGACTATGGGATCTTTATGCTTTTGCATCAGGACCTTCTAGATTTAAGAACACTACTCCACTAGTGCGTTTATTGGATGAATATTTTCGACTTCTTTGCCTAGGTTCTTATCGTGCATCAATCAATATAATTGAAAACGGGTCCTTCACGTTGTCAAATGACCTATGGAGAATAAGTAGCGTGAATTCCGATTATACAATGTGCCAGAGTTATCCATTTGCTTTGGTTGTTCCAAAGATCATTAGTGATGATGAAGTGCTCCAGGCTAGTAGCTTCCGTGCAAGATGTCGACTACCTGTAGTTTCATGGTGCAATCCTTTGACTGGAGCAGTTGTTGCACGATCTTCTCAACCCTTAGTAGGTCTTATGATGAACATGAGGAGCAACATGGATGAAAAACTGGTGGGTGCACTTTGCAGCAAACTAGATAATGGCTCAAGGAGAAAGCTATATATTGTTGATGCACGGCCTAGGAAAAATGCATTGGCTAATGGTGCCATGGGAGGTGGTTCAGAATCATCATCAAACTATTTTCAATCCGAGATAGTCTTTTTGGGGATAGACAACATCCATGCGATGAGAGAGAGCTTTGTTCGGCTCCGAGAATACATGGACACTCATGGAAGAACGTCATCAGATGGAATGTCCTCTTTTTTGAGACAAGGTGGGTCAACATGGGGTGGTGGCAATCTAAGTAGTATGTCTGCTTCGGTATCAACCCTTGGGGACAGTGGATGGTTACTACATGTTCAGAATGTGTTGGCTGGTGCAGCTTGGATTGCTGCTCGTGTTGCAATGGAAAATGCTTCTGTTCTTGTGCATTGCAGTGATGGATGGGATAGGACAAGCCAGTTGGTTTCACTTGCTAATTTGTTGCTTGATCCATATTATCGGACATTCACAGGGTTTCAGGCACTCGTTGATAAAGACTGGCTTGCTTTTGGTCATCCATTTTCTGATCGGGTGGGAATGCCATCTGTCTCTGGAACTGGCAATGTGCCTTTCGAGTTATCTAGGCAGTCTTCAACTAGCAATTTCCCACCATCACCCATGCGCCAGTCATCAGGGACTTTTGTGTCGCAACCTCCAGCTTCATCTCACTCGCATAACTCCAACAACTATTCTCCCATTTTTTTGCAGTGGGTTGATTGTGTTTCGCAATTATTACGGATATATCCTTTTGCTTTTGAGTTTTCTGCGGCTTTCCTGGTGGACTTCGTAGACTGCATGCTTTCTTGTCGTTTTGGAAACTTCTTATGTAACAGTGAGAAGGAGAGGCAGCAATTCAATGTTTTCGAGGCATGTGGATGTCTGTGGGTATACTTGGCTGATTTGCGGACATCATCAGGAGGTTCCCATGTGCATTACAATCCCTTTTATGATCCACTGAAGCATAGTGGTCCTCTGCTGCCCCCAGCAGCAGCATTAGCCCCTACTTTGTGGCCCCAATTCCACCTTCGTTGGGCATGTCCAGAAGAAGCTCAAGCTGGGGAGATTGAAGCACAATGCAGGAAGATAGTTATGAAATATGCTGAGATGCAGAAGGCTAAAGAAATGGCAGAAAGGAAAGCTAAAGAAGTTACAAATTCCATGGAGTCGTTGAATGCTGAATTACGACGTGAGAAGCAGCTAAACAGCTCAGCTATGAACATGGCCAAGAGTATGAGCAAAGAAAATATGGCCATAAAGCGTGCAATTCAGTCAATGGGGTGCAAGGTTCATGTCTCTGGTAGTAGTGGTGAATGCATTGTTGATATTGAAAGCAACCCAGACATTCTGTGTTGTTCCTCTAGGAAAGAATCAAATAGTAATGTGCGTGATGACAAAAAGGATATGTCCGTTTCAGTAGTGATTACAGCAGGTGATGATGATGATGGAAACAATGCAATtggtcgggtatgtgaaaccctatgcccatttcgctttggagatggtcgggtatgtgaaaccctatgcccatttcgctttggagatggAGGCTGCAGGTGGCCAAATGGTGGTTGTGCTCAACTAGGTAGCCAGTATGTTGGCCTGAAGGCAAATTTTGATGCATTTGACAAACTATCAATTGATGATAGTTATTTCAAGTCTGAGTGA 2595 0.4281 MDMPMNRATRTTSLRDASDSSKLEGTGSWDAIEWTKIEPPISRFVSHANLDFLLESELVAAEGNGVVLVNTDDAGTLMVTNFRLIFLSEGTRKVIALGTIPLATIEKFIKPAVKVQSNTRHVDKTPAQRLLQVIGKDMRILVFSFRPRTKQRHVVYDALLRCTKPTRLWDLYAFASGPSRFKNTTPLVRLLDEYFRLLCLGSYRASINIIENGSFTLSNDLWRISSVNSDYTMCQSYPFALVVPKIISDDEVLQASSFRARCRLPVVSWCNPLTGAVVARSSQPLVGLMMNMRSNMDEKLVGALCSKLDNGSRRKLYIVDARPRKNALANGAMGGGSESSSNYFQSEIVFLGIDNIHAMRESFVRLREYMDTHGRTSSDGMSSFLRQGGSTWGGGNLSSMSASVSTLGDSGWLLHVQNVLAGAAWIAARVAMENASVLVHCSDGWDRTSQLVSLANLLLDPYYRTFTGFQALVDKDWLAFGHPFSDRVGMPSVSGTGNVPFELSRQSSTSNFPPSPMRQSSGTFVSQPPASSHSHNSNNYSPIFLQWVDCVSQLLRIYPFAFEFSAAFLVDFVDCMLSCRFGNFLCNSEKERQQFNVFEACGCLWVYLADLRTSSGGSHVHYNPFYDPLKHSGPLLPPAAALAPTLWPQFHLRWACPEEAQAGEIEAQCRKIVMKYAEMQKAKEMAERKAKEVTNSMESLNAELRREKQLNSSAMNMAKSMSKENMAIKRAIQSMGCKVHVSGSSGECIVDIESNPDILCCSSRKESNSNVRDDKKDMSVSVVITAGDDDDGNNAIGRVCETLCPFRFGDGRVCETLCPFRFGDGGCRWPNGGCAQLGSQYVGLKANFDAFDKLSIDDSYFKSE 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01770 864 MobiDBLite consensus disorder prediction 1 25 - -
Gma20g01770 864 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 211 655 IPR029021 -
Gma20g01770 864 SUPERFAMILY PH domain-like 53 175 - -
Gma20g01770 864 ProSiteProfiles Myotubularin phosphatase domain. 202 651 IPR010569 -
Gma20g01770 864 Pfam Myotubularin-like phosphatase domain 172 593 IPR010569 -
Gma20g01770 864 ProSitePatterns Tyrosine specific protein phosphatases active site. 439 449 IPR016130 GO:0016311|GO:0016791
Gma20g01770 864 PANTHER MYOTUBULARIN-RELATED 810 863 IPR030564 -
Gma20g01770 864 PANTHER MYOTUBULARIN-RELATED 19 810 IPR030564 -
Gma20g01770 864 Gene3D - 65 163 IPR011993 -
Gma20g01770 864 Coils Coil 676 717 - -
Gma20g01770 864 MobiDBLite consensus disorder prediction 504 533 - -
Gma20g01770 864 PANTHER PHOSPHATIDYLINOSITOL-3-PHOSPHATASE MYOTUBULARIN-1 810 863 - -
Gma20g01770 864 PANTHER PHOSPHATIDYLINOSITOL-3-PHOSPHATASE MYOTUBULARIN-1 19 810 - -
Gma20g01770 864 CDD PTP-MTM-like 262 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01770 Gma-Chr20 45026295 45039794 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01770 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 66.513 0.0 1129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01770 K18081 - gmx:100789349 1689.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01770 20 45026295 45039794 Gma20g01770 20 45026295 45039794 ECH
Gma10g01941 10 46642923 46657677 Gma20g01770 20 45026295 45039794 GST