Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01751 ATGGAACTTCTCTCTGTGTCTGTCTCACTTAGCAAATGCCAAACATTATCCTTTCCGAAACCAAAGGCACCCCAAATTCACGAACTTCCATTAAACATTAGATTACCCAACAAAACAAATCATTTCAGTCTTTCATCATCTTCTTCTCCTTGTTGTAATTGGTCCATTACTAGGGTAGCAGCAGCAACAACATACCCTTCCTTCAATCCTTCCACCACTCAGAACCCTCACTGGATGGTGCTCATGGACACGCCTCCTCAAGGGGTCAATTCCAAGCCACAAGTCATTGATTATTACGTGAAAACTCTGCAAACCGTTCTTGGCAGTGAGAAAGATGCTCAAATGTGTATATATGATGCTTCATGGAACACTCACTTCGGTTTTTGTTGTGACATTGATGAAGAAATATCCGCCCAGCTGGCCAGTTTACCTGAGGTCTTGTTGGTTAGGCCTGACCTGGAGTTCAACTCTTTGAAAAAAGACTATAGTTTATCAAGTGGCGAGGCAGGCCACCTATCAGGATTACGAACTAGAACTAATATGTTGTTCCCTGCTGGAAATTCAAAGCATTGGCTTGTTAAAATGGATAAGCCCGGGGTTGAGGCTGTTACCAAGGCTCAGATTGTTGATTATTATGCTCAAATTTTGACCAAGGTCATGGGAAATGAGAAGGATGCACAGATGTGTATATATCATGTTTCCTGGAAAACCAACTTCGGTTTTTGCTGTGAACTTGATGAGGATTGTGCACAAGAGCTTGCTGGTGTGCTAGGTGTCTTGTCAGTTCAGCCAGATAACAATTTTGAGTCTGAAAATAAGGATTATGCAGGCAGTAACTTAGAAAATAGTTGGAATGTGTCCAACTCTTCTGAAGCAAGTCAGGAAGCTCCCTTGAAAACAAAGAAACTTTTTGTGACAGGGCTATCGTTTTATACATCTGAGAAAACCTTGCGTGCAGCATTTGAAGGCTTTGGCGAGTTAGTTGAAGTTAAAGTTATTATGGACAAAATTTCAAAAAGGTCCAAGGGTTATGCATTTGTTGAATACACCACAGAGGAGGCTGCAAGTGCAGCACTCAAAGAGATGAATGGCAAGATTATCAATGGCTGGATGATAGTGGTAGATGTTGCCAAGCCTAACCCACCAAGATACCACAGGAATCATGCTGGATGA 1173 0.4194 MELLSVSVSLSKCQTLSFPKPKAPQIHELPLNIRLPNKTNHFSLSSSSSPCCNWSITRVAAATTYPSFNPSTTQNPHWMVLMDTPPQGVNSKPQVIDYYVKTLQTVLGSEKDAQMCIYDASWNTHFGFCCDIDEEISAQLASLPEVLLVRPDLEFNSLKKDYSLSSGEAGHLSGLRTRTNMLFPAGNSKHWLVKMDKPGVEAVTKAQIVDYYAQILTKVMGNEKDAQMCIYHVSWKTNFGFCCELDEDCAQELAGVLGVLSVQPDNNFESENKDYAGSNLENSWNVSNSSEASQEAPLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKPNPPRYHRNHAG 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01751 390 SMART rrm1_1 302 375 IPR000504 GO:0003723
Gma20g01751 390 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 61 156 IPR037045 -
Gma20g01751 390 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 183 269 IPR037045 -
Gma20g01751 390 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 303 369 IPR000504 GO:0003723
Gma20g01751 390 Gene3D - 270 390 IPR012677 -
Gma20g01751 390 SUPERFAMILY RNA-binding domain, RBD 289 385 IPR035979 GO:0003676
Gma20g01751 390 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 301 379 IPR000504 GO:0003723
Gma20g01751 390 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 30 389 IPR039206 GO:0016554
Gma20g01751 390 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 30 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01751 Gma-Chr20 44817990 44820969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01751 293 383 C2H2 Transcription Factor Family AT2G19380 34.066 2.77e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01751 - - gmx:100791652 791.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01962 10 46889612 46890902 Gma20g01751 20 44817990 44820969 GST