Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01747 ATGGGATTCCCTGACTACATCCAAACATTAGAAGAAGAACGCCGTAAGATTCAGGTGTTCTCCAAAGAGCTTCCTCTTTCCTTGGAACTGGTTACTCAAGCCATTGAAACTTGCAAGCAGCAATTGTCTGGAACTACGAGTGAGTATAATTTGAATGGCCACTCGGAGTGTTCGGAGCAGACAACGTCAACGGAAGGGCCTGTTTTGGAGGAGTTTATTCCAATCAAGAAAAGGGCATCATCATCATCCCCTTGTTGTGATGAAGATGATGAGCAACATTCTCACAAGCAAAGGGTTTCAAAGGAAAATAATAACAGTGATAAGAGGAAATCAGACTGGCTTAGATCTGTTCAGTTGTGGAATCCAGATCCCCCAGCTGAGGAGGATGTGAGTAAGATAGTGTGTGGGGTGGAACTGAAGAGAAGTGGAAGTGGTGGTGGTGCTTTCCAGCCACTCCACAAGGAAGAAAAAAGTTCAAAGCCAAGTGAATCATTGAGTAAAACACCCTCTTCAACCCCGGTAGTTGCGACGAGTTCTAGCGCTGTAGAACCCGCAGAAGAAAAATCTCTGAATGAGGGACAGAGAAAGCTTCGCAGGTGCTGGTCACAGGACTTGCATAAGCGCTTCTTGCATGCCCTTCAGCAGCTTGGGGGTGCAGATTCTGCCACACCAAAGCAAATCAGAGAGCTGATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTGCAGAAATACCGTTTGCACACTAGAAGGCCAATTCCCATGGTTCACAACAGTTCCGATCCACAAACAGCACCTTTTGTCCTTGTAGGGAACATTTTTGTCCAATCACCAGAATATGCAGCTGTAGCTACCTCAACAGCATCAAGAGAAGTGGCCACAGTTGCAGCACCTGCTAGAATTTATGCACCAGTGGCCACACATCCTACACCTGTTTCACACCCACCAGATGATTCAATTAAGAAGCCACAGTTTAAGAAAGTAAAGCTGTTTGAGCTTTCAAATTCAGATGATAGGGCTAATCACAGTGAAGGAGCTGTTCATTCAAATTCCCCTACCTCATCCTCCTCCACACATACCTCTACTTCCCCTGGCTACTGA 1110 0.4568 MGFPDYIQTLEEERRKIQVFSKELPLSLELVTQAIETCKQQLSGTTSEYNLNGHSECSEQTTSTEGPVLEEFIPIKKRASSSSPCCDEDDEQHSHKQRVSKENNNSDKRKSDWLRSVQLWNPDPPAEEDVSKIVCGVELKRSGSGGGAFQPLHKEEKSSKPSESLSKTPSSTPVVATSSSAVEPAEEKSLNEGQRKLRRCWSQDLHKRFLHALQQLGGADSATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPIPMVHNSSDPQTAPFVLVGNIFVQSPEYAAVATSTASREVATVAAPARIYAPVATHPTPVSHPPDDSIKKPQFKKVKLFELSNSDDRANHSEGAVHSNSPTSSSSTHTSTSPGY 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01747 369 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 2 367 - -
Gma20g01747 369 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 196 251 IPR006447 GO:0003677
Gma20g01747 369 MobiDBLite consensus disorder prediction 309 369 - -
Gma20g01747 369 SUPERFAMILY Homeodomain-like 194 254 IPR009057 -
Gma20g01747 369 Pfam Myb-like DNA-binding domain 198 249 IPR001005 -
Gma20g01747 369 MobiDBLite consensus disorder prediction 142 194 - -
Gma20g01747 369 MobiDBLite consensus disorder prediction 79 110 - -
Gma20g01747 369 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 367 IPR044787 GO:0003700|GO:0006355
Gma20g01747 369 MobiDBLite consensus disorder prediction 322 347 - -
Gma20g01747 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 193 253 IPR017930 -
Gma20g01747 369 MobiDBLite consensus disorder prediction 82 110 - -
Gma20g01747 369 Gene3D - 195 253 - -
Gma20g01747 369 MobiDBLite consensus disorder prediction 163 185 - -
Gma20g01747 369 MobiDBLite consensus disorder prediction 348 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01747 Gma-Chr20 44780008 44781827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01747 6 284 G2-like Transcription Factor Family AT1G13300 48.399 3.21e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gma20g01747 Myb_DNA-binding 2.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01747 - - gmx:100789537 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01768 10 44896402 44913728 Gma20g01747 20 44780008 44781827 GST