Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01711 ATGGGTGGGAGCGAGAGCTCGAAGGGTGTGGTTATGGGTCGTTTGGTTGAGTGCATCAAGGAGATTTCTGGGTTGCCAGAGTGTCAGAACTTGTGCAAGAGGGTGTATGGGAATTTGGTTCGCAGGGTGAAGCTTTTGAGTCCTCTCTTTGAGGAATTGAAGGATGGTGATGAGTCCCTCAGCGATGAACAGCTTCAAAGCTTTGAGTCTCTCTTTGTTGCTTTGGATTCAGCTAAGACCCTTTTGAAGGATGTGAACCAAGGGAGTAAGCTTTATCAGGCTTTGCGGAGGAATGATACAGCAGATAAGTTCCAAAAAGTAACTGAAAAAATTGAAGCTGTGCTCAGTGAAATTCCTTACTGCAAACTTGAGATATCAGAGGAAGTTCGAGAACAGATTGAACTGGTGCATGCTCAATTCAAAAGAGCCAAAGCTCAAACAGAATTTGCTGATATACAACTAGACCTAGATATGGCAGTGGCGCAAAAAGAAAAGGACCCTGATCCTGCTGTACTGAAGAGACTTTCTGAGAAGTTGCATCTAAGGACAATAAATGACCTAAGGAAAGAGTCTAGTGAATTACCTGAATTGTTGATCACAAGTGGTGGAGAACTAGGCGACTCTTTTGAAATGATCACATCCCTTCTCAGCAAACTGAGGGAATGCGTGCTCACAGAAAATCCTGAAGTTGGCACTGGTGAATGTGAAAAATTGTCAGTTAAGCACAGGTCTCCCGTGATCCCAGATGATTTTCGATGTCCTATATCTCTTGAACTAATGAAAGATCCTGTAATAGTCTCCACTGGTCAGACATATGAAAGATCTTGCATTCAAAAATGGCTTGATGCTGGTCACaaaacctgccccaagacacagcagacacttgtgcatacagcccttacccctaactatgttttgaagagtttgattgctttgtggtgtgaaagcaatggcattgagctaccaaagaagcaagggagctgtagaacaaagaaatgtggtggcagcagtctttcagaTTGTGATCGAACTGCTATTAGTGCTTTATTGGATAAACTAATGAGTAACGATATAGAACAGCAAAGGGCAGCTGCTGGTGAGCTCAGGTTGTTGGCTAAGAGGAATGCAGACAACCGAGTATGCATTGCTGAGGCAGGAGCAATACCACCTCTTGTAGATTTGTTGTCTTCTTCAGACCCTCGAACTCAGGAGCACGCTGTTACAGCACTTCTCAATCTTTCCATCAACGAGAGTAACAAAGGAACTATAGTAAATGCTGGAGCCATACCGGATATTGTAGATGTACTGAAAAATGGAAGCATGGAGGCTAGAGAAAATGCAGCTGCAACTCTCTTCAGTTTATCGGTTCTAGACGAGAATAAGGTGCAAATAGGTGCAGCTGGAGCTATCCctgctctaataaagttactttgtgaaggtactcccagagatgaagcactagctattatggcaatccttgcaagccaccatgaaggccgggtagcgattggtcaggccgagccaattcctattcttgttgagGAAATGCTGTAA 1554 0.3514 MGGSESSKGVVMGRLVECIKEISGLPECQNLCKRVYGNLVRRVKLLSPLFEELKDGDESLSDEQLQSFESLFVALDSAKTLLKDVNQGSKLYQALRRNDTADKFQKVTEKIEAVLSEIPYCKLEISEEVREQIELVHAQFKRAKAQTEFADIQLDLDMAVAQKEKDPDPAVLKRLSEKLHLRTINDLRKESSELPELLITSGGELGDSFEMITSLLSKLRECVLTENPEVGTGECEKLSVKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLVHTALTPNYVLKSLIALWCESNGIELPKKQGSCRTKKCGGSSLSDCDRTAISALLDKLMSNDIEQQRAAAGELRLLAKRNADNRVCIAEAGAIPPLVDLLSSSDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVLDENKVQIGAAGAIPALIKLLCEGTPRDEALAIMAILASHHEGRVAIGQAEPIPILVEEML 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01711 517 SUPERFAMILY RING/U-box 246 322 - -
Gma20g01711 517 PANTHER U BOX DOMAIN-CONTAINING 12 483 - -
Gma20g01711 517 Pfam Armadillo/beta-catenin-like repeat 375 414 IPR000225 GO:0005515
Gma20g01711 517 ProSiteProfiles U-box domain profile. 246 320 IPR003613 GO:0004842|GO:0016567
Gma20g01711 517 PANTHER U BOX DOMAIN-CONTAINING 484 514 - -
Gma20g01711 517 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 12 483 - -
Gma20g01711 517 Gene3D - 11 120 IPR036537 GO:0007166
Gma20g01711 517 Pfam U-box domain 247 317 IPR003613 GO:0004842|GO:0016567
Gma20g01711 517 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 484 514 - -
Gma20g01711 517 CDD RING-Ubox_PUB 251 293 IPR045210 -
Gma20g01711 517 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 386 428 IPR000225 GO:0005515
Gma20g01711 517 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 320 IPR013083 -
Gma20g01711 517 Gene3D - 334 517 IPR011989 -
Gma20g01711 517 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 427 469 IPR000225 GO:0005515
Gma20g01711 517 SMART arm_5 416 456 IPR000225 GO:0005515
Gma20g01711 517 SMART arm_5 375 415 IPR000225 GO:0005515
Gma20g01711 517 SMART arm_5 457 495 IPR000225 GO:0005515
Gma20g01711 517 SUPERFAMILY ARM repeat 343 514 IPR016024 -
Gma20g01711 517 SMART Ubox_2 250 313 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01711 Gma-Chr20 44324560 44328234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01711 11 514 U-box Gene Family AT3G54850 59.927 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01711 - - gmx:100777452 981.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01711 20 44324560 44328234 Gma20g01711 20 44324560 44328234 ECH
Gma10g01999 10 47397657 47402198 Gma20g01711 20 44324560 44328234 GST