Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01696 ATGGAATATTCAAAGGAAATTCATAGCAATGGCAATGCAAATGGTTCATTGAATCTTTGCAATGGTAGCACGGACCCACTTAACTGGGGCATGGCTGCGGAAGCTTTGAAAGGTAGCCACCTTGATGAGGTGAAGCGAATGGTGGAGGACTACCGTAACCCCGTGGTGAAGTTGGGTGGCAAGAGCCTCACCGTGTCTCAGGTGGCGGCGGTTGCCACCCGGCACCACGGCGGAGTTACGGTGGAGCTGGCCAAGGAGACCCGCCACGGTGTCAAGGCCAGCAGTGACTGGGTCATGGATAGCATGGTTAAGGGCACTGATAGTTACGGAGTCACCACAGGGTTCGGTGCAACCTCACATAGAAGAACCAAACAAGGTGCTGCCCTCCAAAACGAACTCATCAGATTTTTGAATGCTGGCATTTTTGGTAATGGCACAGAATCTTGTCACACCTTACCTCACTCAGCTACAAGGGCAGCCATGTTGGTTAGAATCAATACCTTGCTTCAAGGATATTCAGGCATTAGATTTGAAATCATGGAGGCCATTTCTAAGTTTTTGAACCATAACATAACCCCATGTCTTCCTCTTCGTGGCACAATCACTGCATCAGGTGACTTGGTTCCTTTATCATATGTTGCTGGCCTCTTAATTGGAAGGCCAAACTCCAAGTCTATTGGACCTAATGGACAAGTTCTTAATGCTAAAGAGGCCTTTCAACTAGCAGGAATTGATGGTGGTTTCTTTGAGTTGCAACCTAAAGAGGGTTTGGCACTAGTAAATGGCACTGCAGTAGGATCTGGCTTGGCTTCCGTGGTCCTTTTTGAGGCAAACTTACTTGTCATTCTTTCTGAAGTCTTGTCTGCAATTTTTGCTGAAGTTATGCAAGGAAAACCAGAGTTCACCGACCACTTGACTCATAAATTGAAGCACCACCCTGGCCAAATTGAGGCTGCAGCTATCATGGAACATATATTAGATGGAAGCTCATATTGTAAGGCAGCACGGAAGTTACATGAGATTGATCCACTTCAAAAGCCTAAACAAGATAGGTATGCTCTTAGAACATCGCCTCAATGGCTTGGACCACAAATTGAAGTAATTAGGCATGCAACAAAGATGATTGAAAGGGAGATAAACTCTGTAAATGATAACCCCTTGATTGATGTTTCAAGGAATAAGGCACTACATGGGGGGAATTTCCAAGGTACCCCAATTGGTGTTTCAATGGATAACACCCGTTTAGCCATTGCATCAATTGGGAAACTTATGTTTGCCCAATTCTCTGAACTTGTAAATGACTTCTACAACAATGGTTTGCCTTCAAATCTAACAGCTAGTCGCAATCCGAGCTTAGATTATGGATTCAAAGGTGCTGAAATTGCAATGGCATCCTATTGTTCAGAACTTCAATACCTTGCCAATCCTGTCACCAATCATGTCCAAAGCGCTGAGCAACATAACCAAGATGTGAACTCTTTAGGCTTAGTTTCTTCAAGAAAGACAGCTGAAGCAATAGATATATTAAAGCTTATGTCATCCACTTTCTTAGTTGCTTTGTGCCAAGCCATTGATTTGAGGCATTTGGAGGAAAACTTGAAGAACACTGTTAGGAATACCGTTAGTCAAGTGGCCAAAAGAGTTCTCACAGTTGGCATCAATGGTGAGTTACATCCTTCTAGGTTCTGTGAGAAAGACTTGCTTAAAATTGTTGATCGTGAGTATGTCTATGCTTACATTGATGACCCCTGTAGTGCAACCTACCCTCTGATGCAAAAATTGAGATTAGTCCTAGTTGATCATGCATTGCAAAATGGTGACAAAGAGGTGAATTCAAGTACCTCAATTTTCCAAAAGATTGGTGCCTTTGAGGAAGAGCTCAATGCCCTTTTGCCAAAAGAGGTGGAAAGTTCTAGGATTGAAGTTGAGAATGGAAATCCTGCCATTCCTAACCGAATTAAGGAATGCAGATCTTACCCATTATATAAGTTTGTTAGAGAAAATTTGGGTACAACTTTGCTAACAGGAGAGAAAGTCAAGTCACCTGGTGAGGAATTTGATAAGGTATTTACTGCATTGTGTGAAGGGAAGTTAATTGATCCTTTGTTGGACTGTCTAAAAGAGTGGAAGGGTGCTCCTCTACCAATATGCTGA 2154 0.4308 MEYSKEIHSNGNANGSLNLCNGSTDPLNWGMAAEALKGSHLDEVKRMVEDYRNPVVKLGGKSLTVSQVAAVATRHHGGVTVELAKETRHGVKASSDWVMDSMVKGTDSYGVTTGFGATSHRRTKQGAALQNELIRFLNAGIFGNGTESCHTLPHSATRAAMLVRINTLLQGYSGIRFEIMEAISKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPNGQVLNAKEAFQLAGIDGGFFELQPKEGLALVNGTAVGSGLASVVLFEANLLVILSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYCKAARKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLVSSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNTVRNTVSQVAKRVLTVGINGELHPSRFCEKDLLKIVDREYVYAYIDDPCSATYPLMQKLRLVLVDHALQNGDKEVNSSTSIFQKIGAFEEELNALLPKEVESSRIEVENGNPAIPNRIKECRSYPLYKFVRENLGTTLLTGEKVKSPGEEFDKVFTALCEGKLIDPLLDCLKEWKGAPLPIC 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01696 717 Pfam Aromatic amino acid lyase 63 539 IPR001106 -
Gma20g01696 717 PANTHER HISTIDINE AMMONIA-LYASE 16 717 IPR001106 -
Gma20g01696 717 SUPERFAMILY L-aspartase-like 25 717 IPR008948 GO:0003824
Gma20g01696 717 Gene3D Fumarase/aspartase (Central domain) 264 711 - -
Gma20g01696 717 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 16 717 - -
Gma20g01696 717 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 199 215 IPR022313 GO:0016841
Gma20g01696 717 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 25 707 IPR005922 GO:0005737|GO:0006559|GO:0016841
Gma20g01696 717 Gene3D - 17 263 IPR024083 -
Gma20g01696 717 CDD PAL-HAL 61 527 IPR001106 -
Gma20g01696 717 Gene3D - 530 651 IPR023144 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01696 Gma-Chr20 44152043 44158063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01696 25 717 Monolignol Biosynthesis Gene Families AT3G53260 83.117 0.0 1229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01696 K10775 - gmx:100818777 1421.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01673 03 42844985 42848878 Gma20g01696 20 44152043 44158063 ECH
Gma19g01721 19 46527255 46531217 Gma20g01696 20 44152043 44158063 ECH
Gma20g01696 20 44152043 44158063 Gma20g01696 20 44152043 44158063 ECH