Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01688 ATGGTTGGACCAAACTTCATGGACGAGATAGACTGCGGCAGCTTCTTTGACCACATCGACGACCTTCTCGATTTTCCCGTCGAGGACGTTGACGGCGGCGCCGCCACCTTACCGTCGGTAGCCGCTGCCGGCAACTGCAACTCGCTGGCGAGCATCTGGCCCGCTGAGTCCGACTCGTTTCCTGCCTCCGACTCGGTGTTTTCCGGCAACACCGCTTCGGACCTCTCGGCGGAGCTCTCCGTTCCGTATGAAGACATTGTCCAATTGGAATGGTTGTCCAATTTTGTGGAGGATTCCTTTTGTGGGGGGAGCCTAACAATGAACAAAGTGGAAGAGCCATCATGTACCACCAAGGAGGACTCAGTAAACACCCAATTTCACACATCAAGCCCAGTTTCTGTCCTTGAAAGTAGCAGTTCTTGCTCTGGTGGCAAGACTTTTCCACTAAGCAGTCCAGAGATTTACATCCCTGTGCCATGTGGACGTACACGCAGCAAGCGTCCACGTCCAGCAACCTTCAATCCTAGGCCTGCCATGAACCTCATTTCCCCTGCCTCTTCTTTTGTTGGGGAGAACATGCAGCCTAATGTCATATCATCCAAGTCATCTTCAGATTCTGAGAATTTTGCTGAGTCTCAACTTGTTCCCAAGATGCCAAAAGAAGCTTCTGGGGAGCCTAAGAAGAAAAAGAAAGTGAAGCTGCCACTTCCATTAGTTCCAACTGATAACAATCAAAATGCCTCACAACCTGTTAGGAAATGCATGCATTGTGAGATAACCAAGACACCACAGTGGAGGGCAGGGCCAATGGGACCAAAAACACTGTGCAATGCTTGTGGTGTTCGTTACAAGTCCGGCCGGCTCTTCCCCGAGTACCGGCCTGCTGCAAGTCCAACTTTTTGCCCATCTGTGCACTCCAATTCTCATAAGAAGGTCCTGGAAATGAGATGCAGGGGCATTGACAAATCCGGTTTTGCAATCAATTCAGCTGCCTCACCCGAACTCATTCCAAACACTAACAGCAGCCTGCCCCTGGAGTACATGTGA 1047 0.5081 MVGPNFMDEIDCGSFFDHIDDLLDFPVEDVDGGAATLPSVAAAGNCNSLASIWPAESDSFPASDSVFSGNTASDLSAELSVPYEDIVQLEWLSNFVEDSFCGGSLTMNKVEEPSCTTKEDSVNTQFHTSSPVSVLESSSSCSGGKTFPLSSPEIYIPVPCGRTRSKRPRPATFNPRPAMNLISPASSFVGENMQPNVISSKSSSDSENFAESQLVPKMPKEASGEPKKKKKVKLPLPLVPTDNNQNASQPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSVHSNSHKKVLEMRCRGIDKSGFAINSAASPELIPNTNSSLPLEYM 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01688 348 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 252 311 - -
Gma20g01688 348 ProSiteProfiles GATA-type zinc finger domain profile. 248 284 IPR000679 GO:0006355|GO:0043565
Gma20g01688 348 MobiDBLite consensus disorder prediction 196 231 - -
Gma20g01688 348 Pfam GATA zinc finger 254 287 IPR000679 GO:0006355|GO:0043565
Gma20g01688 348 ProSitePatterns GATA-type zinc finger domain. 254 279 IPR000679 GO:0006355|GO:0043565
Gma20g01688 348 MobiDBLite consensus disorder prediction 196 211 - -
Gma20g01688 348 Gene3D - 249 298 IPR013088 GO:0006355|GO:0008270
Gma20g01688 348 SMART GATA_3 248 298 IPR000679 GO:0006355|GO:0043565
Gma20g01688 348 PANTHER GATA TRANSCRIPTION FACTOR 1 348 - -
Gma20g01688 348 CDD ZnF_GATA 253 310 IPR000679 GO:0006355|GO:0043565
Gma20g01688 348 PIRSF Txn_fac_GATA_plant 3 341 IPR016679 GO:0003677|GO:0005634|GO:0045893
Gma20g01688 348 PANTHER GATA TRANSCRIPTION FACTOR 8 1 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01688 Gma-Chr20 44066558 44068496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01688 19 316 C2C2-Gata Transcription Factor Family AT4G32890 37.500 2.41e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma20g01688 GATA 5.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01688 - - gmx:100816641 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01688 20 44066558 44068496 Gma20g01688 20 44066558 44068496 ECH
Gma10g02020 10 47672592 47675948 Gma20g01688 20 44066558 44068496 GST
Gma16g01419 16 33178907 33181870 Gma20g01688 20 44066558 44068496 PCT
Gma02g00672 02 6492026 6497310 Gma20g01688 20 44066558 44068496 PCT
Gma20g01688 20 44066558 44068496 Gma16g01419 16 33178907 33181870 PCT
Gma20g01688 20 44066558 44068496 Gma02g00672 02 6492026 6497310 PCT