Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01687 ATGTTTATGGTTATGGATTCAGCAGAAAGGTGCTTAGATTCTCAACTATGGCATGCCTGTGCTGGTGCCATGGTTCAAATGCCACCCCTCAACACAAAAGTCTTCTACTTTCCCCAGGGCCACGCTGAACACGCTCATGGGAAGAGGGTAGATTTCGCCAAAAACCAAACCCGTGTTCCACCACTCATCCCTTGCAGACTCTCTGCCATGAAATACATGGCAGACCCTGACACTGACGAGGTGTATGTCAAAATGAGGCTCACCCCTTTGAGGGAACATGAATTGTTGGATTCACAAGATGATTGTTTCTTGGGGAACAGTGCTGGTGGAGGAGGAGTTGATCAGGGTCAAGAGAAGCCTCCAACTTCTTTTGCCAAGACACTCACACAATCTGATGCAAACAATGGTGGAGGCTTTTCTGTGCCTCGTTACTGTGCTGAAACCATTTTCCCAAGGTTGGATTATTCTGCTGAGCCTCCTGTTCAGACCATCATTGCTAAGGATATGCATGGACAGTGCTGGAAGTTCAGGCATATCTATAGAGGGACACCAAGGAGGCATCTTTTGACCACTGGATGGAGCAATTTCGTGAACCAGAAGAGGCTTGTTGCTGGCGACTCTATTGTGTTTCTGAGGGCAGAAAATGGGGATCTTTGTGTTGGGATAAGGCGGGCTAAGAAGGGGATTGGTGGAGGGACTGAGTTCTCTTCTGGTGGATGGAATAACCCTCTCTTTGGTGGTGGCTTCTTGTGTGGGAGTGAGAGCAATTTGATGAGTGGTGGTGATCATGAGATGTTGGTGGGAAGAGTGGCTGCTGAATCTGTTGTTGAGGCTGTGACTTGTGCTGTTAATGGAAGGCCCTTTGAGGTTGTGTACTATCCAAGGGCTAGTTCGCCAGAGTTTTGTGTTAAGGCTTCTGTTGTGAAGGCTGCAATGCAAATTCAGTGGTGTTCTGGGATGAGATTCAAAATGCCCTTTGAGACTGAGGATTCTTCTAGGATCAGCTGGTTCATGGGAACCATTTCTTCTGTTCAAGTTGCAGATCCCATCCTTTGGCCTGATTCTCCATGGCGTCTTCTGCAGGTGGTGTGGGATGAGCCAGATTTACTTCAAAATGTGAAGTGTGTAAACCCGTGGCTGGTTGAACTAGTCTCAAACATGCCTACATTCAATCTCTCTGCATACTCACCTCCTAGAAAGAAACAACGTTTTCTACAGGACCCTTATTTTCAAGTCATCAACCAACTCCCAATGCCTTCATTCTCTAGCAACCTTCTCAATTACACCAACTCTATTTGTACCATTGAAGATAACAATAGTTCTGGAGGCATACAGGGAGCCAGGCATCCTCAATTTGGACTATCTCCTTCTGATTTTCCCTTCAACAAGCTCCCAGCAGACATGCTTCTAGGTGGTTTCTCAAGGCTTGACCATGCAGCAGCACAACCTATTATGCCTCATTGTGGAACCTTTAAGAACAACACCACTACTAAGGCCAATGTTGACATTTCTTGCTTGTTGACTGTGGGAAATCCTGGCCAGAATTTCAAGGAATCCAATGAAACAAAAGCACCTCACATCTTGTTATTTGGAAAACTCATTCACACTGAGCAGAAGAGCTCAAACACTACTAGCTCTGCTAGTACTAATGGTAATAGTGTATCTGAGGGGAATTCACTCAAGACATCTAATGCTTCTGATGGAGGATCTCCCTGGTACAAGGAACAACACAAGTCTGATCTTGGAAATGACAATGTTAACACATTGTGTATTGCTTTATAA 1782 0.4551 MFMVMDSAERCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHGKRVDFAKNQTRVPPLIPCRLSAMKYMADPDTDEVYVKMRLTPLREHELLDSQDDCFLGNSAGGGGVDQGQEKPPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKRLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGTEFSSGGWNNPLFGGGFLCGSESNLMSGGDHEMLVGRVAAESVVEAVTCAVNGRPFEVVYYPRASSPEFCVKASVVKAAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPILWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPTFNLSAYSPPRKKQRFLQDPYFQVINQLPMPSFSSNLLNYTNSICTIEDNNSSGGIQGARHPQFGLSPSDFPFNKLPADMLLGGFSRLDHAAAQPIMPHCGTFKNNTTTKANVDISCLLTVGNPGQNFKESNETKAPHILLFGKLIHTEQKSSNTTSSASTNGNSVSEGNSLKTSNASDGGSPWYKEQHKSDLGNDNVNTLCIAL 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01687 593 ProSiteProfiles B3 DNA-binding domain profile. 124 226 IPR003340 GO:0003677
Gma20g01687 593 MobiDBLite consensus disorder prediction 107 132 - -
Gma20g01687 593 PANTHER AUXIN RESPONSE FACTOR 16 6 582 - -
Gma20g01687 593 Gene3D - 316 389 - -
Gma20g01687 593 SUPERFAMILY DNA-binding pseudobarrel domain 119 225 IPR015300 -
Gma20g01687 593 SMART B3_2 124 226 IPR003340 GO:0003677
Gma20g01687 593 CDD B3_DNA 123 224 IPR003340 GO:0003677
Gma20g01687 593 MobiDBLite consensus disorder prediction 539 579 - -
Gma20g01687 593 Gene3D - 122 226 IPR015300 -
Gma20g01687 593 Pfam Auxin response factor 278 361 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma20g01687 593 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 582 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma20g01687 593 Pfam B3 DNA binding domain 124 225 IPR003340 GO:0003677
Gma20g01687 593 MobiDBLite consensus disorder prediction 539 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01687 Gma-Chr20 44044635 44047193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01687 9 579 B3 DNA Binding Superfamily AT4G30080 55.593 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma20g01687 B3 2.5e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01687 - - gmx:100818234 1203.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01716 19 46454120 46457693 Gma20g01687 20 44044635 44047193 ECH
Gma10g00491 10 4885321 4890628 Gma20g01687 20 44044635 44047193 ECH
Gma20g01687 20 44044635 44047193 Gma20g01687 20 44044635 44047193 ECH
Gma10g02021 10 47690797 47694203 Gma20g01687 20 44044635 44047193 GST