Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01655 ATGGAAGATTCAGAAGAGGATGAACTTTTGAATCTTAGCCTTTCAGTTGCTGCTGATAGGGAAAGGAAAAAGAAGGGAAAGACAATTAGGGAACATAATGTTTCCATGAGTAGTACCACTACTACTACTAGGAACTCCTATGAAAGGAAGATCTTTAGGCTTCTCCAAATGAGGGAGCAGATGCTAAGACAAGACCATCATAGGAGGAAAGGTGTTGTGGAAGATGGAAATGGCCTCCCTCTGATCCATTTGTTACTCTCAACCGCAACTGCAGTTGATGACAACAACATGGACTCGTCCTTAGAGAATCTGGCTGATTTATACCAAACAGTTTCCATAACTGGTGACTCAGTTCAACGTGTTGTGGCCTATTTTGTTGATGGTTTATCTGCAAGGCTTCTCACAAGAAAATCCCCATTCTATGATATGCTCATGGAGGAACCAACAACTGAAGAAGAGTTCCTTTCATTTACGGATCTCTACAGGGTTTCACCTTACTTCCAATTTGCTCACTTCACAGCAAACCAAGCTATTTTGGAGGCCTTTGAGAAAGAGGAAGAGAGGAACAACCGTGCCTTGCATGTCATTGACTTTGATGTCTCCTATGGCTTCCAATGGCCCTCTCTCATTCAGTCTCTTTCAGAGAAGGCAACAAGTGGAAACCGCATATCCCTCAGGATAACCGGTTTTGGGAAGAATCTGAAGGAGCTTCAAGAAACTGAGTCTAGGTTGGTTAATTTCTCAAAGGGTTTTGGAAGCCTTGTGTTTGAATTCCAAGGGCTGCTTAGAGGCTCAAGGGTCATCAACCTAAGGAAGAAAAAGAACGAAACCGTGGCTGTCAACTTGGTTTCTTATTTGAACACTTTGAGTTGTTTCATGAAGATCTCTGACACATTGGGATTTGTTCATTCCCTTAACCCTTCCATTGTTGTGGTGGTGGAGCAAGAAGGTAGCAGGAGTCCTAGGAGCTTCTTGTCGAGGTTCACGGACTCCTTGCACTACTTTGCAGCGATGTTTGATTCACTTGATGATTGTCTTCCACTTGAAAGTGCTGAGAGGTTGAGAATTGAGAAGAAGCTTTTGGGGAAAGAGATCAAAAGCATGCTCAACAATGATGTGGATGGTGGTGTGGATTGCCCAAAGTATGAGAGGATGGAGACATGGAAAGCTAGAATGGAGAATCATGGGTTTGTTGCCACAAAAATAAGCTCAAAGTCTATGATCCAAGCAAAACTGTTGCTGAAGATGAGGACCCATTATTGCCCTCTTCAGTTTGAGGAAGAGGGGGGTGGGGGTTTCAGGGTTTCTGAAAGAGATGAAGGAAGGGCTATTTCTTTAGGGTGGCAAAATAGGTTTCTGCTTACTGTCTCAGCATGGCAATCAGTCTGA 1389 0.4348 MEDSEEDELLNLSLSVAADRERKKKGKTIREHNVSMSSTTTTTRNSYERKIFRLLQMREQMLRQDHHRRKGVVEDGNGLPLIHLLLSTATAVDDNNMDSSLENLADLYQTVSITGDSVQRVVAYFVDGLSARLLTRKSPFYDMLMEEPTTEEEFLSFTDLYRVSPYFQFAHFTANQAILEAFEKEEERNNRALHVIDFDVSYGFQWPSLIQSLSEKATSGNRISLRITGFGKNLKELQETESRLVNFSKGFGSLVFEFQGLLRGSRVINLRKKKNETVAVNLVSYLNTLSCFMKISDTLGFVHSLNPSIVVVVEQEGSRSPRSFLSRFTDSLHYFAAMFDSLDDCLPLESAERLRIEKKLLGKEIKSMLNNDVDGGVDCPKYERMETWKARMENHGFVATKISSKSMIQAKLLLKMRTHYCPLQFEEEGGGGFRVSERDEGRAISLGWQNRFLLTVSAWQSV 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01655 462 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 460 IPR005202 -
Gma20g01655 462 ProSiteProfiles GRAS family profile. 72 460 IPR005202 -
Gma20g01655 462 MobiDBLite consensus disorder prediction 21 42 - -
Gma20g01655 462 Coils Coil 351 371 - -
Gma20g01655 462 Pfam GRAS domain family 81 460 IPR005202 -
Gma20g01655 462 PANTHER OSJNBA0084A10.13 PROTEIN 8 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01655 Gma-Chr20 43647188 43648576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01655 89 459 GRAS Transcription Factor Family AT3G54220 35.000 1.49e-55 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma20g01655 GRAS 1.4e-91 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01655 - - gmx:100813979 894.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01655 20 43647188 43648576 Gma20g01655 20 43647188 43648576 ECH
Gma10g02060 10 48124784 48126181 Gma20g01655 20 43647188 43648576 GST
Gma16g01428 16 33304923 33306594 Gma20g01655 20 43647188 43648576 PCT
Gma02g00680 02 6560393 6561823 Gma20g01655 20 43647188 43648576 PCT
Gma20g01655 20 43647188 43648576 Gma16g01428 16 33304923 33306594 PCT
Gma20g01655 20 43647188 43648576 Gma02g00680 02 6560393 6561823 PCT