Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01652 ATGGACGGTAGTAACAGTGGGGTTGACCAAATATGCTTCTGCTGTGTTTCAACAGCTAGCAACAGAGTTCAGCTTCTTCCTTTCAATCTGTGGCTGGATTTTGATCTCTCTGAGTTTAAAATGGATCCAAAAGGAAGCTTATGTGCTACAAGGTCCTCTTCCTTAACCTCTCCTGGGAATGGACTACAAACAAATTTGTCGTCAGATCCTCCCTCTTTCTATGGGGAAAATTGTCCACTGAGTGACTCCTCACATACCAGTAAACTCCAAGATTGGAATCCAAGTGCGATGTTGAATAACCTTTCCTTCCTTGAAGTAAAGATTCATCAGCTTCGGGATCTAGTGCATGTAATTGTTAGTAAAAAGTGCCAACCTTTTGGACAACCTCATGAACTAGTGACTCAGGAACAACAGCTCATCACAGCCGATCTTACATCAATTATTGTTCAATTGATCTCTACTGCTGGTAGTCTTCTCCCCTCTGTTAGGCACACCCTCACAAACGCAAATCCCTTGGTTGGCCAGCTTGACCAGCTTCATGGGATTAACCTCCCTTTTGAATCAGAACCAAGTAGTGGTATTAGGCCACAAAATAACAGTGGAAATAAACTGTTTGATCAGTCCATTCAGAATGATCTACCAAATAAATTGGAAATGGAGCAAAACTACAATATGGAAGAGCATGAGCCAAAAGATGAAGAAGATGTGGATGAGGGAGAGAATCTTCCACCCGGTTCCTACGAGATTTTGCAATTAGAAAAAGAAGAAATCCTCGCCCCTCACACACATTTCTGTACAATATGTGGGAAAGGATTCAAGAGGGATGCAAATCTCCGAATGCACATGCGCGGCCATGGTGACAAGTACAAAACTCCTGCAGCTCTTGCAAAACCACACAAAGAATCCGGGTCTGAACCAAAGCTCATCAAGAGGTATTCCTGCCCCTATAACGGCTGCAAGCGTAACAAGGATCACAAGAAATTCCAACCACTAAAGACCATTTTGTGTGTCAAAAACCACTACAAGAGAACACACTGTGACAAGAGCTACACTTGCAGCAGATGCAACACCAAGAAGTTTTCAGTCATGGCAGACCTTAAAACTCATGAAAAACACTGCGGTAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCTCTATTCCAAGGCCATACACCAGCTATTCCTTTGGATGAAACCAAAGGAATGGCTGAGCCACCTGATATCCAGAACAGAGAAAGCAACAATAAGGTAGAAAGTATTAACTTCTGTTTTGGATCAAATTCTTCAAGTGAAAATGTAGTTCAAAACATGATGGATATGAAAGATTCAGATGGTTGTTTCTCTTTTCCCATGTCAGGATCCTTTAATTATGCTCCCAAATTTGGTGGCGGTGAATCAAGTTCTGACAATCTGTAG 1452 0.4187 MDGSNSGVDQICFCCVSTASNRVQLLPFNLWLDFDLSEFKMDPKGSLCATRSSSLTSPGNGLQTNLSSDPPSFYGENCPLSDSSHTSKLQDWNPSAMLNNLSFLEVKIHQLRDLVHVIVSKKCQPFGQPHELVTQEQQLITADLTSIIVQLISTAGSLLPSVRHTLTNANPLVGQLDQLHGINLPFESEPSSGIRPQNNSGNKLFDQSIQNDLPNKLEMEQNYNMEEHEPKDEEDVDEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDKYKTPAALAKPHKESGSEPKLIKRYSCPYNGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDETKGMAEPPDIQNRESNNKVESINFCFGSNSSSENVVQNMMDMKDSDGCFSFPMSGSFNYAPKFGGGESSSDNL 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01652 483 ProSitePatterns Zinc finger C2H2 type domain signature. 265 285 IPR013087 -
Gma20g01652 483 Gene3D Classic Zinc Finger 337 406 - -
Gma20g01652 483 SUPERFAMILY beta-beta-alpha zinc fingers 262 285 IPR036236 -
Gma20g01652 483 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 79 463 IPR044300 GO:0010044|GO:0010447
Gma20g01652 483 SMART c2h2final6 263 285 IPR013087 -
Gma20g01652 483 SMART c2h2final6 312 345 IPR013087 -
Gma20g01652 483 SMART c2h2final6 350 372 IPR013087 -
Gma20g01652 483 Gene3D Classic Zinc Finger 247 318 - -
Gma20g01652 483 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 79 463 - -
Gma20g01652 483 MobiDBLite consensus disorder prediction 190 207 - -
Gma20g01652 483 MobiDBLite consensus disorder prediction 187 207 - -
Gma20g01652 483 ProSiteProfiles Zinc finger C2H2 type domain profile. 263 290 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01652 Gma-Chr20 43624522 43627687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01652 231 459 C2H2 Transcription Factor Family AT1G34370 77.253 2.16e-124 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma20g01652 zf-met 0.0017 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01652 - - gmx:100801536 892.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01652 20 43624522 43627687 Gma20g01652 20 43624522 43627687 ECH