Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01641 ATGGCCCCTGAGGTTTTACGCAAGCAAACTGGACCAGAAGTGGATGTATGGAGTGCCGGTGTTATCCTATACATCTTACTGAGAGGGCACCCACCTTTCTGGGCAAAATCCGAATCAGCAATTTTCCAAGAGATTTTACATGGAGAGATTGATTTTGTTTCTGATCCGTGGCCAAGTATAACAGAAAGTGCTAAGGATTTGATAAAAAAAATGTTGGATAAGGACCCTGAGAAAAGAATTTCTGCTCATGAAGTCTTATGTCACCCTTGGATTGTTGATGATAGTGTTGCTCCTGACAAACCTCTGGACCCTGCTGTTTTGACACGCCTAAAGCATTTCTCAACTATGAATAAACTTCAGAAGATGGCATTACGTATCATAGCAGAAAGACTTTCAGAGGAAGAAATAGGTGGACTAAAAGAGTTATTTAAAATGATTGATGAAGACAATAGTGGGACAATCACTTTTGAGGAACTCAAGGATAGTTTGAAAAGTGTGGGCTGTGATCTCATAGAATCTGAAATTAAATTCCTTATGGAAGCGGCTGATATAGACAACAATGGAACAATAGACTATGGTGAATTTCTCGCTGCTACACTGCACTTGAATAAGATGGAAAGAGAAGAGAATTTGGTTGCTGCTTTTGCCTATTTTGATAAAGATGGTAGTGGTTACATCACCATTGAAGAGATTCAACAGGCTTGTAAAGACTTTGGCCTTGGTAATTTGCACCTGGATGAGATAATCAATGAGATTGATCAAGACAACGATGGGAGAATAAATTATGCAGAGTTTGCAGCAATGATGAGAAAGGGTGGTCCGGATGTTGGTAGGAGCAGAAAAGACAATTACAATGCTTCATTATTGGATATGCTTGTGGAGTGA 885 0.3955 MAPEVLRKQTGPEVDVWSAGVILYILLRGHPPFWAKSESAIFQEILHGEIDFVSDPWPSITESAKDLIKKMLDKDPEKRISAHEVLCHPWIVDDSVAPDKPLDPAVLTRLKHFSTMNKLQKMALRIIAERLSEEEIGGLKELFKMIDEDNSGTITFEELKDSLKSVGCDLIESEIKFLMEAADIDNNGTIDYGEFLAATLHLNKMEREENLVAAFAYFDKDGSGYITIEEIQQACKDFGLGNLHLDEIINEIDQDNDGRINYAEFAAMMRKGGPDVGRSRKDNYNASLLDMLVE 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01641 294 ProSiteProfiles Protein kinase domain profile. 1 91 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01641 294 Pfam EF-hand domain pair 139 199 IPR002048 GO:0005509
Gma20g01641 294 Pfam EF-hand domain pair 209 270 IPR002048 GO:0005509
Gma20g01641 294 ProSiteProfiles EF-hand calcium-binding domain profile. 170 205 IPR002048 GO:0005509
Gma20g01641 294 SUPERFAMILY EF-hand 130 270 IPR011992 -
Gma20g01641 294 SMART serkin_6 1 91 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01641 294 SUPERFAMILY Protein kinase-like (PK-like) 1 118 IPR011009 -
Gma20g01641 294 ProSiteProfiles EF-hand calcium-binding domain profile. 134 169 IPR002048 GO:0005509
Gma20g01641 294 Gene3D - 98 272 - -
Gma20g01641 294 ProSiteProfiles EF-hand calcium-binding domain profile. 206 241 IPR002048 GO:0005509
Gma20g01641 294 ProSitePatterns EF-hand calcium-binding domain. 147 159 IPR018247 -
Gma20g01641 294 ProSiteProfiles EF-hand calcium-binding domain profile. 244 275 IPR002048 GO:0005509
Gma20g01641 294 Pfam Protein kinase domain 1 91 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01641 294 ProSitePatterns EF-hand calcium-binding domain. 183 195 IPR018247 -
Gma20g01641 294 SMART efh_1 210 238 IPR002048 GO:0005509
Gma20g01641 294 SMART efh_1 244 272 IPR002048 GO:0005509
Gma20g01641 294 SMART efh_1 138 166 IPR002048 GO:0005509
Gma20g01641 294 SMART efh_1 174 202 IPR002048 GO:0005509
Gma20g01641 294 ProSitePatterns EF-hand calcium-binding domain. 219 231 IPR018247 -
Gma20g01641 294 PANTHER SERINE/THREONINE-PROTEIN KINASE 2 281 - -
Gma20g01641 294 ProSitePatterns EF-hand calcium-binding domain. 253 265 IPR018247 -
Gma20g01641 294 Gene3D Transferase(Phosphotransferase) domain 1 1 96 - -
Gma20g01641 294 PANTHER BNAA09G05220D PROTEIN 2 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01641 Gma-Chr20 43512897 43515374 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01641 1 288 EF-hand Containing Proteins AT4G09570 74.483 9.20e-158 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gma20g01641 Pkinase 3.4e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01641 K13412 - gmx:102659421 573.163