Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01628 ATGGCCGGCAACTCCGCCACCGCCACCGCCACCTCCTCCGCATTGTCTCCCGAGAATTTGAAATTCAATTTCTCCCCCGATAACCCCTCCCGAATCATCCTCACTTCGGATCAGGTCAACCACTGTACCCAAGCCCTCAACCTTCTGAAGGAGAAGCTCCACGATCCTCACGTGATCACTCAGGAGTTCGCACACTTGCAGGCGAACAGGATAACTCCGAGTGAGATGAGAAGAAGATGCACCGTCGCGTATGACGCCGTCAATTTGAGCAAAAACCGATACACGGACGTTTTGCCATTTAACAAGAACAGGGTTGTTCTCAAATCAAGTACTGATTATAGGCCTGAAGCACAGGGGTATATCAATGCAAGCCTTATCTCGACCTCTTCCGCTGGAAATGTGTCCCACTTTATAGCCACACAAGGTCCACTTCCACATACTTGTGAGGATTTTTGGGAAATGATTACCCAATATCACTGCCCTGTGATTATCATGCTTACTAGGTTGGTGGATAATTACAAGATGGTAAAGTGTGTAGATTATTTTCAAGCTGAGGATGGGCCTAGAGAAGTTGGTAATATTTCTATTATTGGTAAATGGGAGAACACTACTGAAACTTCACTGGTGTTGCGCCATTTGGAGGTGAACCATAGAGAGGTAGATGATGCACCATTATCTGTTTTGCATATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCAAAAGATACACTAGCTGTGCGTGAAATTTTGAAAAGATTATACCATTTACCATCAAACCTTGGTCCAATAGTGGTGCACTGCAGTGCAGGTATTGGTAGAACTGGAGCATACTGCACAATTCACAACACAATTCAGAGAATACTTGCTGGAGATATGTCTGCTGTACGCATTGCTAACACAATAGCTATGTTCAGGTCCCAGCGTATTGGAATGGTTCAAACCCAGGACCAGTACATTTTCTGCTATAATGCTATCATAGATGAACTGGAAGACCTTGTATCTCAGCAGCAATAG 1017 0.4494 MAGNSATATATSSALSPENLKFNFSPDNPSRIILTSDQVNHCTQALNLLKEKLHDPHVITQEFAHLQANRITPSEMRRRCTVAYDAVNLSKNRYTDVLPFNKNRVVLKSSTDYRPEAQGYINASLISTSSAGNVSHFIATQGPLPHTCEDFWEMITQYHCPVIIMLTRLVDNYKMVKCVDYFQAEDGPREVGNISIIGKWENTTETSLVLRHLEVNHREVDDAPLSVLHIQYPEWPDHGVPKDTLAVREILKRLYHLPSNLGPIVVHCSAGIGRTGAYCTIHNTIQRILAGDMSAVRIANTIAMFRSQRIGMVQTQDQYIFCYNAIIDELEDLVSQQQ 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01628 338 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 12 336 - -
Gma20g01628 338 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 12 336 - -
Gma20g01628 338 Pfam Protein-tyrosine phosphatase 88 327 IPR000242 GO:0004725|GO:0006470
Gma20g01628 338 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 248 320 IPR000387 GO:0016311|GO:0016791
Gma20g01628 338 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 46 331 IPR029021 -
Gma20g01628 338 ProSiteProfiles PTP type protein phosphatase domain profile. 59 329 IPR000242 GO:0004725|GO:0006470
Gma20g01628 338 Gene3D Protein tyrosine phosphatase superfamily 31 331 IPR029021 -
Gma20g01628 338 SMART ptp_7 226 328 IPR003595 -
Gma20g01628 338 CDD PTPc_plant_PTP1 120 324 - -
Gma20g01628 338 ProSitePatterns Tyrosine specific protein phosphatases active site. 266 276 IPR016130 GO:0016311|GO:0016791
Gma20g01628 338 PRINTS Protein tyrosine phosphatase signature 119 126 IPR000242 GO:0004725|GO:0006470
Gma20g01628 338 PRINTS Protein tyrosine phosphatase signature 137 157 IPR000242 GO:0004725|GO:0006470
Gma20g01628 338 PRINTS Protein tyrosine phosphatase signature 225 242 IPR000242 GO:0004725|GO:0006470
Gma20g01628 338 PRINTS Protein tyrosine phosphatase signature 263 281 IPR000242 GO:0004725|GO:0006470
Gma20g01628 338 PRINTS Protein tyrosine phosphatase signature 296 311 IPR000242 GO:0004725|GO:0006470
Gma20g01628 338 PRINTS Protein tyrosine phosphatase signature 312 322 IPR000242 GO:0004725|GO:0006470
Gma20g01628 338 SMART PTPc_3 58 331 IPR000242 GO:0004725|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01628 Gma-Chr20 43367967 43371947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01628 37 335 Protein tyrosine phosphatase (PTP) family AT1G71860 68.227 9.21e-161 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01628 - - gmx:100791465 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01628 20 43367967 43371947 Gma20g01628 20 43367967 43371947 ECH
Gma10g02087 10 48422819 48428465 Gma20g01628 20 43367967 43371947 GST