Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01622 ATGGAGAGAAAGTTCATGGCTTTAGGTTTCATTTGGTGGGTGGTGTTGGTTCATCCACTATGCCTGATTTCTGCTAACATGGAAGGAGATGCTTTGCATAGTCTGAGGACAAACTTACAGGATCCCAACAATGTTTTGCAAAGTTGGGATCCTACACTTGTTAATCCATGTACATGGTTTCATGTAACATGCAACAATGATAATAGTGTCATAAGAGTTGATCTGGGGAATGCTGCACTGTCTGGTCAACTTGTTCCGCAGCTTGGTCAGCTCAAGAATTTGCAGTATTTGGAACTCTACAGCAATAACATTACTGGCCCTATTCCAAGTGACCTGGGGAATCTTACTAACTTGGTGAGCTTGGATCTGTACCTAAATCATTTCACTGGCCCAATCCCAGATTCATTGGGCAAGTTGTCAAAATTGCGTTTCCTTCGGCTTAACAATAACAGCTTGTCAGGTCCTATCCCCATGTCACTGACTAATATTACAGCTCTCCAAGTTCTGGATTTGTCTAATAATCATCTATCAGGAGTGGTTCCTGATAATGGCTCCTTCTCATTATTCACTCCTATCAGTTTTGCAAACAACTTGGATCTATGTGGACCTGTCACTGGGCACCCTTGTCCAGGCTCTCCTCCATTTTCTCCTCCTCCCCCTTTTGTCCCTCCACCTCCAATTTCTGCCCCAGGAGGTAATGGTGCCACCGGAGCAATAGCTGGAGGAGTTGCTGCTGGTGCTGCTCTATTATTTGCTGCACCTGCAATTGCATTTGCCTGGTGGCGTCGAAGGAAACCACAAGAATTTTTCTTTGATGTGCCTGCTGAAGAGGATCCTGAAGTCCATCTGGGACAGCTTAAGAGGTTCTCACTACGAGAACTGCAAGTTGCAACAGATAGTTTCAGTAATAAGAACATTCTTGGGAGGGGAGGATTTGGTAAGGTGTACAAAGGACGTTTGGCAGATGGTTCATTGGTGGCTGTGAAAAGATTGAAAGAGGAACGCACACCAGGTGGGGAGCTTCAGTTTCAGACTGAAGTAGAGATGATTAGCATGGCTGTGCATAGAAATCTCCTTCGACTACGTGGGTTCTGTATGACACCAACAGAAAGGCTACTTGTTTATCCCTACATGGCTAATGGAAGTGTTGCTTCATGCTTAAGAGAGCGTCCTCCACATCAAGAACCCCTGGATTGGCCAACTAGAAAAAGAATAGCTTTGGGATCAGCAAGGGGTCTTTCATATTTGCATGATCATtgtgacccgaagattattcatcgtgatgtgaaagctgcaaacatattgctggatgaagagtttgaggctgttgttggggactttggattggccaaacttatggattacaaggacacgcatgtgacaactgctgtacggggaactattgggcatatagctcctgagtacctctccaccggtaaatcttcagagaaaactgacgtttttggttatggTATCATGCTTCTGGAGCTGATAACTGGACAGAGAGCTTTTGACCTTGCTCGACTCGCTAATGACGATGATGTTATGCTGCTTGATTGGGTAAAAGGACTTCTGAAAGAGAAAAAGCTTGAAATGTTGGTTGATCCTGATCTACAAAACAACTATATAGAAGCTGAGGTAGAACAGTTAATCCAGGTTGCACTGCTCTGCACACAAGGTTCCCCGATGGACCGACCAAAGATGTCAGAAGTGGTGAGAATGCTTGAAGGTGATGGCTTGGCAGAAAGATGGGATGAGTGGCAAAAGGTGGAAGTTCTCCGGCAGGAGGTGGAGCTGGCCCCTCATCCTAATTCTGATTGGATCGTCGACTCAACCGAAAATCTGCATGCAGTAGAGTTATCTGGTCCAAGGTGA 1875 0.4005 MERKFMALGFIWWVVLVHPLCLISANMEGDALHSLRTNLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGQLVPQLGQLKNLQYLELYSNNITGPIPSDLGNLTNLVSLDLYLNHFTGPIPDSLGKLSKLRFLRLNNNSLSGPIPMSLTNITALQVLDLSNNHLSGVVPDNGSFSLFTPISFANNLDLCGPVTGHPCPGSPPFSPPPPFVPPPPISAPGGNGATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPHQEPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNNYIEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEVLRQEVELAPHPNSDWIVDSTENLHAVELSGPR 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01622 624 Gene3D Ribonuclease Inhibitor 24 211 IPR032675 -
Gma20g01622 624 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Gma20g01622 624 SUPERFAMILY L domain-like 28 191 - -
Gma20g01622 624 SMART serkin_6 301 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01622 624 ProSiteProfiles Protein kinase domain profile. 301 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01622 624 Pfam Protein kinase domain 302 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01622 624 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 13 624 IPR031048 GO:0004675|GO:0005102|GO:0006468
Gma20g01622 624 CDD STK_BAK1_like 307 578 - -
Gma20g01622 624 Gene3D Transferase(Phosphotransferase) domain 1 378 595 - -
Gma20g01622 624 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 624 - -
Gma20g01622 624 Gene3D Phosphorylase Kinase; domain 1 270 377 - -
Gma20g01622 624 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Gma20g01622 624 SUPERFAMILY Protein kinase-like (PK-like) 280 576 IPR011009 -
Gma20g01622 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01622 Gma-Chr20 43297983 43304474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01622 1 624 Receptor kinase-like Gene Family AT1G71830 89.120 0.0 1052
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gma20g01622 Pkinase 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01622 K13418 - gmx:100789884 1144.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01622 20 43297983 43304474 Gma20g01622 20 43297983 43304474 ECH
Gma10g02095 10 48477263 48484257 Gma20g01622 20 43297983 43304474 GST
Gma02g00690 02 6684726 6691224 Gma20g01622 20 43297983 43304474 PCT
Gma20g01622 20 43297983 43304474 Gma02g00690 02 6684726 6691224 PCT