Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01620 ATGGAAAACCTTCCACCATTGATGTGCAAAAACCTCATTAGAAAAAGAACCTCTAGGCGATCTACAATGTATCTTGGTGTGAGAAAAAGGCCATGGGGAAGATACGCTGCTGAGATTAGGAACCCATATACCAAAGAGAGACGCTGGCTAGGCACATTTGACACTGCTGAAGAGGCTGCTATAGCTTATGATCTTTCATCTATCAAGATTTGTGGCATTAATGCTCGAACTAATTTTCACTACCCTTTTGTGTCTCTTCCACCACCTCCTATGTCGTTGCCTCCTCCACCGCCACCGCCGACCCCGGAGTTGGATCCAAGTGTTGAAGTTTGTCCAGAGATGAATGCTGCTTACGATGGCGATGATGAATCTCTGGTCATTGCTTCCATTTTGCAAAGTTTTTCTAATACTGGTAACTGTTCATTTTAG 429 0.4406 MENLPPLMCKNLIRKRTSRRSTMYLGVRKRPWGRYAAEIRNPYTKERRWLGTFDTAEEAAIAYDLSSIKICGINARTNFHYPFVSLPPPPMSLPPPPPPPTPELDPSVEVCPEMNAAYDGDDESLVIASILQSFSNTGNCSF 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01620 142 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Gma20g01620 142 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Gma20g01620 142 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Gma20g01620 142 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Gma20g01620 142 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF088 1 133 - -
Gma20g01620 142 CDD AP2 24 79 IPR001471 GO:0003700|GO:0006355
Gma20g01620 142 Pfam AP2 domain 25 70 IPR001471 GO:0003700|GO:0006355
Gma20g01620 142 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 133 - -
Gma20g01620 142 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
Gma20g01620 142 Gene3D AP2/ERF domain 23 81 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01620 Gma-Chr20 43277140 43277568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01620 24 95 AP2-EREBP Transcription Factor Family AT1G12890 67.568 1.25e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gma20g01620 AP2 1.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01620 - - gmx:100816937 222.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02097 10 48500422 48501044 Gma20g01620 20 43277140 43277568 GST