Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01614 ATGGCCACCTCCCAGTCCCAGCATCGCTGCGTTTTCGTTGGGAATATACCGTATGATGCCACAGAGGAACAGCTTATCGAAATCTGCCAAGAGGttggcccagtagtctcattcagACTAGTTATTGACAGAGAAACTGGGAAACCAAAAGGTTATGGATTCTGTGAGTACAAGGATGAAGAGACGGCTTTGAGTGCTCGACGAAATCTTCAGGGTTATGAAATTAATGGGCGGCAATTACGCGTTGATTTTGCCGAAAATGATAAAGGGAATGATAGAAATCGAGAACAGGGTCGTGGCGGTCCTGGAATGACAACAAATGTTGACCATCAGAAACAAGTTGGTGTCCCAGCTGTCCATGGGGAAGCTGTTCAGCATCAGCCTATTGGTCTTCATATTGCCATAACAGCTGCAGCTGTCATGACAGCAGCTCTAGGTGGTGCTCAGTTTGGCATCCAGTCAAATCAAAACAGTTTGCAGAGTCAGTCAGCATTGGCACATGATCCTTTAACTCTGCATCTGGCCAAAATGTCCAGGAGTCAGCTGACAGAGATTATCTCTGAGCTGAAGGGAATGGCTACACAAAACAAAGAACTGGCTCGCCAGCTGTTGCTTTCAAGGCCGCAGTTGCCCAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGAATGGTGACTTCCCAAGTGTTACAAATGCCAAACCTTAGGCTGGTTTCTGATCAAACCTCACAGTCTTCAATGAATGAAGGCCAGCTGGGTCAGGCATCATTGGTTCAAACTCTGTCAGGCCTTCCTCATGGGCAGGACAAGTTGCAGCCTGGTTTGACACCTTATGCTCAAGAAGGCCAAGTCAACACCATACCTCATAATCCTTTGGTTCCTAGTCAATTAACTGCGCATCCAAAGCCTCCAGTGCAGCCTCGGATTCCCCTTCAGCAAAATCCAAACAATCTTGTACTGCCAGGAACATTGTCTGGGCAGTCTAATTTAATGCTTCCTTCTGCACGTTCTCCAGGTTTGGGAAGTTTGTCTGTTAGGCCTCCAATTCAACTGGCAACTTCAACTGCTCTAAACCAGCAAATGCATGCCTCTTTGCTACAGCATTCTGTACATGTTGGAAACTCAACTGTAGGACATAATGTTCAAAAGCCTGGCCCCTCCATGTCAACAACTAATTCTCAGTTATTGAGTAAAGGTGATAAATCTTCTAAAGTTATTGAGGATTTAAATTGGGCCAAGAGAACTAATACATATTCAAAATCAAACATTCCTTTGGGAGTAGAGAAAACAAACATGGTTCGTGATTCTTCAGAATCTTTTACTCGGCCGTCAAAGGTTATGAAATTGGATGAGGGAAGGAGCACCCCTCTTTCTGCAGGGATTTTGGATATGCCTGTCACCGATGGATCATCTCATATCCTTGGAAGAAGCTCATTACCTGTACATGCAGCTCCTAAAGCGGAAGGGCAATACTCTGAGCAACAATCTTCTCAGCTTCCACCTGATGTGGAGTCTGTTTTGCTGCAACAAGTATTGAATCTGACACCAGAGCAATTAAGTTCCTTGCCACCAGATCAGCAACAACAGGTCCTTCAGCTCCAGCAGGCTCTTCGGCGAGATCAGATACAGCCCTCATAA 1635 0.4495 MATSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGNDRNREQGRGGPGMTTNVDHQKQVGVPAVHGEAVQHQPIGLHIAITAAAVMTAALGGAQFGIQSNQNSLQSQSALAHDPLTLHLAKMSRSQLTEIISELKGMATQNKELARQLLLSRPQLPKALFQAQIMLGMVTSQVLQMPNLRLVSDQTSQSSMNEGQLGQASLVQTLSGLPHGQDKLQPGLTPYAQEGQVNTIPHNPLVPSQLTAHPKPPVQPRIPLQQNPNNLVLPGTLSGQSNLMLPSARSPGLGSLSVRPPIQLATSTALNQQMHASLLQHSVHVGNSTVGHNVQKPGPSMSTTNSQLLSKGDKSSKVIEDLNWAKRTNTYSKSNIPLGVEKTNMVRDSSESFTRPSKVMKLDEGRSTPLSAGILDMPVTDGSSHILGRSSLPVHAAPKAEGQYSEQQSSQLPPDVESVLLQQVLNLTPEQLSSLPPDQQQQVLQLQQALRRDQIQPS 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01614 544 Pfam Hinge domain of cleavage stimulation factor subunit 2 160 230 IPR025742 -
Gma20g01614 544 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Gma20g01614 544 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Gma20g01614 544 Gene3D - 151 232 - -
Gma20g01614 544 Pfam Transcription termination and cleavage factor C-terminal 506 538 IPR026896 GO:0031124
Gma20g01614 544 SMART rrm1_1 10 83 IPR000504 GO:0003723
Gma20g01614 544 MobiDBLite consensus disorder prediction 85 108 - -
Gma20g01614 544 MobiDBLite consensus disorder prediction 374 401 - -
Gma20g01614 544 Gene3D - 499 541 IPR038192 -
Gma20g01614 544 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 1 539 - -
Gma20g01614 544 CDD RRM_CSTF2_CSTF2T 11 85 - -
Gma20g01614 544 PANTHER CLEAVAGE STIMULATION FACTOR, 3' PRE-RNA, SUBUNIT 2 1 539 - -
Gma20g01614 544 Gene3D - 1 115 IPR012677 -
Gma20g01614 544 MobiDBLite consensus disorder prediction 374 399 - -
Gma20g01614 544 SUPERFAMILY RNA-binding domain, RBD 5 104 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01614 Gma-Chr20 43233675 43241161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01614 11 165 Eukaryotic Initiation Factors Gene Family AT1G22760 26.923 2.40e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01614 K14407 - gmx:100806489 1016.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02102 10 48530260 48536606 Gma20g01614 20 43233675 43241161 GST