Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01613 ATGGGTGAGGCTTCGGGAGCTGGTTCCGCTGATTGTTTCAGCCAGATGATGTCGTCGATGCCGGGTTTTCGCTTCCATCCCACGGATGAGGAGTTGGTGATGTACTATCTGAAGCGGAAGATTTGTGGGAAGAGGCTGAAGCTCGACGTGATTCATGAAACCGATGTGTATAAGTGGGATCCCGAGGATTTGCCTGGGCAATCTATATTGAAAACGGGAGATAGGCAATGGTTCTTTTTCTGTCACAGAGATAGGAAATATCCTAATGGTGGAAGGTCTAACCGAGCAACCAGACGTGGGTATTGGAAAGCAACAGGAAAGGATCGTAACGTGATATGCAATTCTAGGTCAGTTGGAGTGAAAAAGACCCTGGTTTTCTACGCAGGCAGAGCTCCTAGTGGTGAGCGGACTGATTGGGTTATGCATGAATACACCTTGGATGAAGAGGAGCTTAAGAGATGCCAGGGTGTTAAGGACTATTATGCACTTTACAAGGTTTACAAGAAAAGTGGACCTGGTCCTAAAAATGGTGAACAGTATGGTGCACCATTTAATGAAGAAGAGTGGGCAGATGATGACATAGTAGATTTTAATATTAACTCAGCTGATCAGGAGGCTCCAAATGATGTTGCTGATAATGTTAATGTACCACTGCCTTTTCTTGATGATGAAATCAATAACATCATTAGGGAAATTTTGGATGATGAGCTTGTCCTAGATCAGCAGCATGTGAATGGCTATCCTGACTTTCCTCAGGTTGTTAGTGAAGAAACACAAAGTACTGTTGTGGATCAGTTCTCTGAGGATGTGATGCTCCCTGAACCAGTCAGAATCTCACATCCTAGCTGCCAATTTTTTGATGCACAGCCTAGCTTTGACTTCAATCGGCCAGTTACTTCTCATCTGCATGTTTCTGAAACATCTGAGGTCACTTCTGCTTCCAACATTAAAACAAAGGAGCTTGACTTTAATGAGGATGGCTTCTTGGAAATTAATGATCTCATTGATACTGAACCTACATTGTCAAATGTTGAAAATTCTGTGGAGTACCAGCATTTTGAAGATGGGTTAAGTGAACTTGATTTGTTCCAAGATGCACAGATGTTTCTTCGTGACTTGGGGCCAATTATTCATGAAACAGATTCACATGCATATACAAATGCCCTTGTCAGCAGCAATATTGAATGTCAAAGTTACCAATTGCTGCCAAATCCAGAGGATGCCAATCAAACTGTTGGTGAATTCTGGATGCATGGTGAAAGTAATCAGCTATCATCCCCAGGTGTTGTATATGAATCTGTTGGCTTTCCTACGGAAGGCAATAACAATCAAAGTAGCACTGTGGAAGATGTTGCTACAAGTAGCTTGTCCTCTGCTCTCTGGGCCTTTGTTGAGTCAATACCTACTACTCCTGCATCAGCTGCTGAAAGTGCATTGGTGAACCGAGCTTTGAATCGAATGTCTAGCTTCAGCAGGTTGAAGATCAAGCACACCAACATTGCTGCATCAGACATTACAACAGGAATCCTTCTGACGTGA 1539 0.4308 MGEASGAGSADCFSQMMSSMPGFRFHPTDEELVMYYLKRKICGKRLKLDVIHETDVYKWDPEDLPGQSILKTGDRQWFFFCHRDRKYPNGGRSNRATRRGYWKATGKDRNVICNSRSVGVKKTLVFYAGRAPSGERTDWVMHEYTLDEEELKRCQGVKDYYALYKVYKKSGPGPKNGEQYGAPFNEEEWADDDIVDFNINSADQEAPNDVADNVNVPLPFLDDEINNIIREILDDELVLDQQHVNGYPDFPQVVSEETQSTVVDQFSEDVMLPEPVRISHPSCQFFDAQPSFDFNRPVTSHLHVSETSEVTSASNIKTKELDFNEDGFLEINDLIDTEPTLSNVENSVEYQHFEDGLSELDLFQDAQMFLRDLGPIIHETDSHAYTNALVSSNIECQSYQLLPNPEDANQTVGEFWMHGESNQLSSPGVVYESVGFPTEGNNNQSSTVEDVATSSLSSALWAFVESIPTTPASAAESALVNRALNRMSSFSRLKIKHTNIAASDITTGILLT 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01613 512 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 18 501 - -
Gma20g01613 512 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Gma20g01613 512 PANTHER NAC TRANSCRIPTION FACTORS 2 18 501 - -
Gma20g01613 512 Gene3D NAC domain 28 171 IPR036093 GO:0003677|GO:0006355
Gma20g01613 512 SUPERFAMILY NAC domain 15 169 IPR036093 GO:0003677|GO:0006355
Gma20g01613 512 Pfam No apical meristem (NAM) protein 21 146 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01613 Gma-Chr20 43225544 43231616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01613 12 495 NAC Transcription Factor Family AT1G34190 46.490 7.13e-125 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma20g01613 NAM 3.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01613 - - gmx:100787232 1035.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02103 10 48541439 48545508 Gma20g01613 20 43225544 43231616 GST