Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01600 ATGGAAAACATTGTTCCCCATAGTGTTACCACTTTGTTATTTTCCTTGTTATTCTTCTGCCTCACCCTGACAACAAAGATAGGAGTCACTTGTCTCTCCCCTGATGGACAAGCCCTTCTTTCTCTTCTACCTGCTGCAAGATCATCACCTTCTGTTCTCTCCTCATGGAACCCTTCAAGCTCAACACCTTGTTCATGGAAAGGCATCACTTGCTCCCCACAAGGTAGAGTCATCTCCCTCTCTATTCCAGATACTTTTCTCAACCTCTCCTCTTTACCTCCTCAGCTCTCCTCTTTATCAATGCTTCAACTTCTTAATCTTTCTTCAACCAATGTCTCTGGCTCCATTCCACCCTCTTTTGGTCAACTTCCTCATCTTCAGCTGCTTGACCTCTCCTCAAACTCTCTCACTGGTTCCATACCTGCTGAACTTGGAAGGCTCTCTTCTCTTCAATTCCTTTACTTGAACTCCAACAGATTGACAGGAAGCATTCCTCAACATCTTTCCAATCTCACTTCCCTTGAAGTTTTTTGCCTCCAAGACAATCTTCTTAACGGTTCAATCCCATCACAGTTAGGCTCTTTGACATCTCTGCAGCAGTTACGGATCGGGGGCAATCCATATCTCACCGGACAAATCCCCTCACAGTTAGGCCTACTCACCAACCTCACCACTTTTGGTGCAGCTGCCACTGGACTTTCTGGTGTCATTCCCTCTACATTTGGTAACTTGATCAATCTACAAACTCTAGCACTTTATGATACTGAAATTTCTGGTTCAATACCACCAGAACTTGGGTCGTGTTCGGAGCTGAGAAATCTGTACCTACACATGAACAAGCTCACTGGCTCTATCCCTCCTCAATTGAGCAAGTTGCAAAAGCTTACTAGCTTGCTACTTTGGGGAAATTCCTTAACTGGTCCAATCCCAGCAGAGCTTTCCAACTGTTCATCGCTTGTTATATTTGATGTCTCTTCTAATGATCTCTCTGGTGAAATACCTGGGGACTTTGGGAAGCTGGTGGTTCTGGAACAGCTTCATCTATCAGACAATTCACTCACAGGTAAAATACCATGGCAGTTGGGCAACTGCACCAGCCTTTCCACTGTTCAGCTTGACAAGAATCAGTTATCAGGTACTATTCCATGGGAGTTAGGCAAATTGAAGGTTCTGCAGAGTTTTTTCTTGTGGGGTAATTTAGTGTCTGGAACCATACCATCCTCTTTTGGAAACTGCACAGAACTATATGCACTTGACCTTTCAAGGAACAAGCTGACAGGTTCTATACCAGAACAGATTTTCAGCTTGAAGAAGCTGAGTAAGCTTCTGCTTCTGGGAAATTCATTAACAGGAAGGTTGCCATCAAGTGTTTCAAATTGCCAGTCTTTAGTGAGGCTGAGGGTTGGAGAAAACCAACTTTCGGGACAGATTCCGAAAGAGATAGGCCAATTGCAGAATCTGGTGTTCCTTGACTTGTACATGAATCATTTCTCTGGAAGCATACCAGTGGAGATTGCCAACATCACAGTTCTTGAGCTGTTAGATATTCACAACAACTACCTCACTGGGGAAATTTCATCTGTGATTGGGGAGCTTGAAAATTTGGAGCAGCTTGATCTCAGTAGAAACAGTTTGATAGGTGAAATTCCTTGGAGCTTTGGAAACTTCAGCTATTTGAACAAGCTCATCCTCAATAACAACTTGCTGACAGGGTCAATCCCAAAATCCATTAGAAATTTGCAGAAGTTAACTCTTCTGGATTTGAGTTACAACAGCCTCTCTGGTGGCATACCCCCTGAGATTGGTCATGTTACAAGCTTAACCATCAGTTTGGACTTGAGCTCAAACGAATTTACCGGAGAAATCCCAGATTCAGTGTCTGCTTTGACACAGTTACAATCACTTGATCTTTCTCATAATATGCTTTATGGAGGAATCAAGGTTCTGGGGTCTCTAACTAGCCTCACTTCTCTCAATATCTCCTACAACAACTTCTCAGGTCCTATCCCAGTAACTCCATTCTTCAGAACTCTATCTTGTATTTCATATCTTCAGAACCCCCAGCTTTGTCAGTCAATGGATGGGACATCATGTTCTTCAAGCCTGATTCAAAAAAATGGTTTGAAATCCGCAAAAACGATAGCTTGGGTCACAGTCATTCTAGCCTCAGTTACTATAATTCTCATTTCATCCTGGATTCTAGTAACTCGCAATCACGGATACAAGGTTGAAAAAACACTGGGAGCATCAACTTCCACATCAGGAGCTGAGGATTTCTCTTATCCTTGGACTTTCATCCCATTTCAGAAAGTAAACTTCAGCATTGACGATATCTTGGATTGCTTGAAGGATGAAAATGTGATTGGAAAGGGTTGCTCAGGTGTTGTGTACAAGGCTGAGATGCCGAATGGGGAGTTGATAGCAGTGAAGAAGCTGTGGAAAGCAAGCAAAGCAGACGAAGCCGTGGATTCTTTTGCTGCAGAGATTCAGATTCTTGGATACATTCGGCATAGGAACATTGTGAGGCTCATAGGTTATTGTTCTAACGGGAGTGTTAATCTTCTTCTCTATAACTACATCCCAAATGGTAATCTGCGACAGCTTTTAcaagggaacaggagcctagactgggaaacaagatacaagattgcagttggatcagctcaaggtctagcttaccttcaccatgattgtgtccctgcaattctccatagagatgtgaaatgcaataacatacttctagactccaaatttgaggcatatctggcagattttggtcttgcaaagctaatgcattcaccaacttatcatcatgcaatgtccagagttgctgAATATGGCTACTCCATGAACATAACAGAGAAGAGTGATGTCTATAGTTATGGGGTGGTTTTGCTAGAGATACTAAGCGGGCGCAGTGCTGTTGAATCTCATGTTGGAGATGGCCAACACATAGTGGAGTGGGTGAAGAGGAAGATGGGAAGCTTTGAACCAGCTGTATCAATACTAGACACAAAGCTCCAAGGTCTGCCAGATCAAATGGTGCAAGAGATGCTTCAAACACTTGGCATTGCTATGTTTTGCGTGAACTCTTCCCCAACGGAGCGCCCCACGATGAAGGAAGTGGTTGCACTACTTATGGAGGTGAAGAGCCAGCCTGAGGAGATGGGCAAGACCTCTCAACCTCTAATAAAACAGTCCTCAAATCAAAGCTGA 3216 0.4039 MENIVPHSVTTLLFSLLFFCLTLTTKIGVTCLSPDGQALLSLLPAARSSPSVLSSWNPSSSTPCSWKGITCSPQGRVISLSIPDTFLNLSSLPPQLSSLSMLQLLNLSSTNVSGSIPPSFGQLPHLQLLDLSSNSLTGSIPAELGRLSSLQFLYLNSNRLTGSIPQHLSNLTSLEVFCLQDNLLNGSIPSQLGSLTSLQQLRIGGNPYLTGQIPSQLGLLTNLTTFGAAATGLSGVIPSTFGNLINLQTLALYDTEISGSIPPELGSCSELRNLYLHMNKLTGSIPPQLSKLQKLTSLLLWGNSLTGPIPAELSNCSSLVIFDVSSNDLSGEIPGDFGKLVVLEQLHLSDNSLTGKIPWQLGNCTSLSTVQLDKNQLSGTIPWELGKLKVLQSFFLWGNLVSGTIPSSFGNCTELYALDLSRNKLTGSIPEQIFSLKKLSKLLLLGNSLTGRLPSSVSNCQSLVRLRVGENQLSGQIPKEIGQLQNLVFLDLYMNHFSGSIPVEIANITVLELLDIHNNYLTGEISSVIGELENLEQLDLSRNSLIGEIPWSFGNFSYLNKLILNNNLLTGSIPKSIRNLQKLTLLDLSYNSLSGGIPPEIGHVTSLTISLDLSSNEFTGEIPDSVSALTQLQSLDLSHNMLYGGIKVLGSLTSLTSLNISYNNFSGPIPVTPFFRTLSCISYLQNPQLCQSMDGTSCSSSLIQKNGLKSAKTIAWVTVILASVTIILISSWILVTRNHGYKVEKTLGASTSTSGAEDFSYPWTFIPFQKVNFSIDDILDCLKDENVIGKGCSGVVYKAEMPNGELIAVKKLWKASKADEAVDSFAAEIQILGYIRHRNIVRLIGYCSNGSVNLLLYNYIPNGNLRQLLQGNRSLDWETRYKIAVGSAQGLAYLHHDCVPAILHRDVKCNNILLDSKFEAYLADFGLAKLMHSPTYHHAMSRVAEYGYSMNITEKSDVYSYGVVLLEILSGRSAVESHVGDGQHIVEWVKRKMGSFEPAVSILDTKLQGLPDQMVQEMLQTLGIAMFCVNSSPTERPTMKEVVALLMEVKSQPEEMGKTSQPLIKQSSNQS 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01600 1071 SUPERFAMILY Protein kinase-like (PK-like) 766 1046 IPR011009 -
Gma20g01600 1071 Gene3D Ribonuclease Inhibitor 477 573 IPR032675 -
Gma20g01600 1071 Pfam Leucine rich repeat 391 449 IPR001611 GO:0005515
Gma20g01600 1071 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Gma20g01600 1071 PANTHER - 8 1067 - -
Gma20g01600 1071 PRINTS Leucine-rich repeat signature 629 642 - -
Gma20g01600 1071 PRINTS Leucine-rich repeat signature 126 139 - -
Gma20g01600 1071 SUPERFAMILY L domain-like 406 673 - -
Gma20g01600 1071 PANTHER UNNAMED PRODUCT 8 1067 - -
Gma20g01600 1071 Gene3D Ribonuclease Inhibitor 33 189 IPR032675 -
Gma20g01600 1071 Gene3D Ribonuclease Inhibitor 574 700 IPR032675 -
Gma20g01600 1071 Gene3D Ribonuclease Inhibitor 382 476 IPR032675 -
Gma20g01600 1071 Pfam Protein kinase domain 784 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01600 1071 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Gma20g01600 1071 Gene3D Phosphorylase Kinase; domain 1 756 859 - -
Gma20g01600 1071 Pfam Leucine Rich Repeat 534 556 IPR001611 GO:0005515
Gma20g01600 1071 Pfam Leucine Rich Repeat 582 603 IPR001611 GO:0005515
Gma20g01600 1071 SMART LRR_typ_2 123 147 IPR003591 -
Gma20g01600 1071 SMART LRR_typ_2 412 436 IPR003591 -
Gma20g01600 1071 SMART LRR_typ_2 244 268 IPR003591 -
Gma20g01600 1071 SMART LRR_typ_2 532 555 IPR003591 -
Gma20g01600 1071 SMART LRR_typ_2 292 316 IPR003591 -
Gma20g01600 1071 SMART LRR_typ_2 171 195 IPR003591 -
Gma20g01600 1071 SMART LRR_typ_2 340 364 IPR003591 -
Gma20g01600 1071 SMART LRR_typ_2 580 604 IPR003591 -
Gma20g01600 1071 SMART LRR_typ_2 629 656 IPR003591 -
Gma20g01600 1071 MobiDBLite consensus disorder prediction 1051 1071 - -
Gma20g01600 1071 ProSiteProfiles Protein kinase domain profile. 782 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01600 1071 ProSitePatterns Serine/Threonine protein kinases active-site signature. 902 914 IPR008271 GO:0004672|GO:0006468
Gma20g01600 1071 Gene3D Transferase(Phosphotransferase) domain 1 860 1068 - -
Gma20g01600 1071 Gene3D Ribonuclease Inhibitor 284 381 IPR032675 -
Gma20g01600 1071 ProSitePatterns Protein kinases ATP-binding region signature. 788 811 IPR017441 GO:0005524
Gma20g01600 1071 MobiDBLite consensus disorder prediction 1054 1071 - -
Gma20g01600 1071 SUPERFAMILY RNI-like 105 497 - -
Gma20g01600 1071 Gene3D Ribonuclease Inhibitor 190 283 IPR032675 -
Gma20g01600 1071 SMART serkin_6 782 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01600 Gma-Chr20 43121606 43125061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01600 29 1065 Receptor kinase-like Gene Family AT5G56040 44.319 0.0 828
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gma20g01600 Pkinase 1.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01600 - - gmx:100804889 1986.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02113 10 48608632 48612245 Gma20g01600 20 43121606 43125061 GST