Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01587 ATGGGCTGTGTTCAGGCCAAGCCATTGGATTTGGAAGAAGGTCCAGAATACAGGACCCTAGACAGGTTGAAGTTGGATAATGGCTGTGTGCCAAGTACCGACTTTGTTGCTCATAGAAGATCCACCGGTCAAAGACATCATGAACCTAATAAGGAGTATGAAAGGCTGCATCAGAGAAGAGAACAACCCAGAAAGCAAACTAATGAACTTATTGAGTCTGGTGTTGCCAATGCTGAAGGGCTTCATCATAAGGGCAAGGTGGTTGGAAGACAGGGGAGGAGAGTCACACGTCGTGATGATAAGAACTTGGCAAACCAGTGTTGCTTTGAGGATGATATGGTTGATGGGTGGCCAAAGTGGTTGGTTGATAATGTTCCTACACAAGTGTTGGCTGGCTTGGTTCCCAGGAGTGCTGAATCCTACAAAATGATTGATAAGGTTgtaggacaaggaacctacagcaatgtttataaagctctggatcaagaaacaggagaaattgtggccctgaagaaggttaaattcaatacatcagagcctgaaagcattaagtttatggcaagagaaattatgatattacagagactggatcatcccaatgtattaaaactcataggattagccacttcacgaatgcaatacagtatatatctagtttttgacttcatgCAAACAGATTTGGCAAGAGTTATTGCTCGTCCTGAAGAGAGACTAACTGAACCACAGGTCAAGTGCTATATGCATCAATTTCTTTCAggtcttcagcattgccatgacaggggaattctgcatcgagatataaaggggtcaaaccttttgattgacaaaaataggatgcttaagattgcagattttggtctagccaatttttatggaccagagcgtcaccagcctctcacaagccgggttgtgacactatggtacagagctcctgagttattgttaggtgacacagagtatggagttggtgttgatctatggagtgctggatgtctcctggcagaaatgtttaaaggaattccaatcatgcctggcagaaatgagATTGAGCAGCTTCATAAAATTTTCCGGCTATGTGGTACACCATCAGAGGAGTATTGGAGAAAATTGAAACTTTCTACAACTTTTAGACCTCCAAAGTCTTATAGACCTAGCCTTGTAGAAACCTTAAAGAATCTCCCTCCATCTTCTTTAGGTCTTTTGTGCACTTTGCTCGCTTTGGATCCTGCATTCCGTGGCAGTGCATCTAAAGCTCTTAAAAATCAGTTTTTCATTACAAGCCCATTGGCATGTGACCTCTCTGGTCTGCCTGTTATCGTCAGCGAGGATGATGAATTTGTTCAAGCCAATGAACAGATCAAGTACATGAACTCTAAAATCAGGCGTTCTCGTACATATATGGAGCGTCGCAAGAATTCAACATCTAAGAGCCCATTAGAACATACTGTATCTTCTAAGGAGGAATTGACAAGGAATGCTAAACCTGAAACTTTTGTTCCAACTGAAGACATGGATAGCACAAGTAGTACCTCATCTAGTGTAAACCCAGGAGAGGCTAAGGATCAATCACCTTTTTTTCTATCTCCATTTGGAGCTTTAGATCAAAAGCTATCTCCAAAAACCCATCACCATGTTAATGGTGGTGAAAAAAACGTCAAGAACCTTCCTCCATTACCCAAGTCAAAACCAAACGCTAGCAAGAAAGATGAAAGCAAACACAGACCTGACCACTTTTTCAGGTCAGCTTCCACCATAGAATTTAGATACTTAAAAAGGGAGGAACGTTTACTCTTGGAAATTGATGATTAG 1809 0.3002 MGCVQAKPLDLEEGPEYRTLDRLKLDNGCVPSTDFVAHRRSTGQRHHEPNKEYERLHQRREQPRKQTNELIESGVANAEGLHHKGKVVGRQGRRVTRRDDKNLANQCCFEDDMVDGWPKWLVDNVPTQVLAGLVPRSAESYKMIDKVVGQGTYSNVYKALDQETGEIVALKKVKFNTSEPESIKFMAREIMILQRLDHPNVLKLIGLATSRMQYSIYLVFDFMQTDLARVIARPEERLTEPQVKCYMHQFLSGLQHCHDRGILHRDIKGSNLLIDKNRMLKIADFGLANFYGPERHQPLTSRVVTLWYRAPELLLGDTEYGVGVDLWSAGCLLAEMFKGIPIMPGRNEIEQLHKIFRLCGTPSEEYWRKLKLSTTFRPPKSYRPSLVETLKNLPPSSLGLLCTLLALDPAFRGSASKALKNQFFITSPLACDLSGLPVIVSEDDEFVQANEQIKYMNSKIRRSRTYMERRKNSTSKSPLEHTVSSKEELTRNAKPETFVPTEDMDSTSSTSSSVNPGEAKDQSPFFLSPFGALDQKLSPKTHHHVNGGEKNVKNLPPLPKSKPNASKKDESKHRPDHFFRSASTIEFRYLKREERLLLEIDD 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01587 602 Pfam Protein kinase domain 145 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01587 602 MobiDBLite consensus disorder prediction 501 519 - -
Gma20g01587 602 MobiDBLite consensus disorder prediction 38 65 - -
Gma20g01587 602 MobiDBLite consensus disorder prediction 39 65 - -
Gma20g01587 602 MobiDBLite consensus disorder prediction 464 493 - -
Gma20g01587 602 MobiDBLite consensus disorder prediction 464 577 - -
Gma20g01587 602 ProSiteProfiles Protein kinase domain profile. 142 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01587 602 SMART serkin_6 142 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01587 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Gma20g01587 602 SUPERFAMILY Protein kinase-like (PK-like) 139 428 IPR011009 -
Gma20g01587 602 Gene3D Transferase(Phosphotransferase) domain 1 230 467 - -
Gma20g01587 602 MobiDBLite consensus disorder prediction 563 577 - -
Gma20g01587 602 ProSitePatterns Protein kinases ATP-binding region signature. 148 171 IPR017441 GO:0005524
Gma20g01587 602 Gene3D Phosphorylase Kinase; domain 1 134 229 - -
Gma20g01587 602 PANTHER CELL DIVISION PROTEIN KINASE 1 567 - -
Gma20g01587 602 PANTHER CYCLIN-DEPENDENT KINASE 1 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01587 Gma-Chr20 42955428 42962951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01587 136 485 Core Cell Cycle Gene Families AT5G10270 41.576 2.33e-87 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gma20g01587 Pkinase 1.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01587 K08819 - gmx:100803293 1125.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01587 20 42955428 42962951 Gma20g01587 20 42955428 42962951 ECH
Gma10g02127 10 48768310 48772816 Gma20g01587 20 42955428 42962951 GST