Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01583 ATGGAACACGCCTTCCTAGCCATCGTCGCCGCCACCGCCAGCTTCTTCGTGGTTATGCTCCTCCTTTCTGCCGCCATCCTCCTCTGCCAGCACCACCGCAACTCCACCAAAGCCCCAACCCGCAGCACCTCCCAGATCCGAACCCGCTCCGCCCCCCACCGTGACGCCTCCTCCCGCTCCGTCCTGGAAAACTGGTCCTCCGACCCCAACCTGATCAAGATCTCCTGGGAGGAGCTCGCCCGCGCCACCGACAACTTCTCCCCTCACCTCATCGTCGGCGATGGCAGCTTCGGCCTCGTCTACAAGGCCCGTCTCTCCAACGGTGCCACCGTCGCCGTCAAAAAACTCTCCCCCGACGCCTTCCAGGGCTTCCGCGAGTTCACCGCCGAGATGGAGACCCTAAGCCGCCTCCGCCACCCAAACATCGTCAAAATCCTCGGCTACTGGGCCTCAGGCCCGGAACGCCTCCTCGTCTACGAGTTCATCGAAAAGGGAAACCTCGACCAGTGGCTCCACGAACCCGATCTCTCTCGCTCCCCTCTCCCCTGGCCCACACGCGTCCACATCATCCGCGGCGTGGCCCATGGGCTTTCCTACCTCCACGGCCTCGACAAGCCCGTCATCCACCGCGACATAAAGGCCAGCAACATCTTACTGGACTCTAACTTCCAGGCCCATATCGCTGACTTTGGGCTGGCCCGTAGGATCGACAACACTCGGACCCACGTGTCCACGCAGTTCGCGGGAACAATGGGCTACATGCCGCCGGAGTACATAGAAGGGTCCAATGTGGCCAACACGAAGGTGGATGTGTATAGTTTTGGGATTTTGATGATTGAGACCGCGTCGAGCCACAGGCCCAATTTGCCCATGAAATTGGGCACGGACGACATTGGGATGGTCCAGTGGGCCAGGAAGATGAAGGAGAATAATGCGGAGATGGAGATGGTGGATGTGAATATTGGGTTGAGGGGGGAGGAGGAGAGTGTTAAGGAGTACGTGCGCATCGCTTGTGAGTGCACCCGTGAGATGCAGAAGGAAAGGCCCGAAATGCCCCAAGTTGTTCAATGGGGATTGCGTGATGTCAATGGGTCACTTAGCAAACAAAATGTAGAACAAATAATACTTCCTCAACTCAATGCAAAAACTAAATTCCCTAAAACTTATAGTCATTATTTGAGTCGGATGAAGTGGTTTCGAAACCAGTATAACATGATGTCAACCCTTATGCGCAACAACTCTGGCTTTGGATGGGACCCAATTGGAAAAACTTTCACTGCTCATGAGGATGTATGGAAAGATTACTTAAAGTCCCACCCAAGTCACAGCAAACTTCGAGGAAAAAGTATGGTTGATTATGAGTATTTGAAGATCGTTGTTGGGGGTGGAGTTTCTAGCGGGAATAATTCTATATCAGTCGATCCAGATGATACTGATGCAACAACTTTTGAGCCAGAAAATAGAACTGTTGGGATAGAAGAATTTTCATATGATCCTAATAGTGATACATTCATAACACCAAATAACTATGAACCAGCATATCAGCCTCCATCACCAAACCAACCAAGTCCACCATCCCACCCCCCTTTAGATTCAGAGGTTCCCATAGAAAAACAAAACTGTCACAAGCGAAGGAGATCCGAGTATGGAGGGAGTTCAAGCGCTGTTGGGATCAACAATCAAGGCAACGTTCTGGAAAATCTTTCTGTTGGCATTGAGACTATTGCTGTGAATTTTGAAAAAATATCCAACATGATGGAGAAAAGAGAAAAAGATAGAGATAGAGATAGAGAGCTCGAGGGTATTATTTGGGATGTTATAAAAGAAATTCCAAATTTGGATGACATAACGCGTTTCAAGACAGCTGAATTGTTAAATACTAAAGCAAAAAAGGATTTTTTCTTGAAGATGTCACCGGAAGAACGCTCATCTTGGATAAACTTTAAGTTAGGGAATAATTAA 1962 0.4995 MEHAFLAIVAATASFFVVMLLLSAAILLCQHHRNSTKAPTRSTSQIRTRSAPHRDASSRSVLENWSSDPNLIKISWEELARATDNFSPHLIVGDGSFGLVYKARLSNGATVAVKKLSPDAFQGFREFTAEMETLSRLRHPNIVKILGYWASGPERLLVYEFIEKGNLDQWLHEPDLSRSPLPWPTRVHIIRGVAHGLSYLHGLDKPVIHRDIKASNILLDSNFQAHIADFGLARRIDNTRTHVSTQFAGTMGYMPPEYIEGSNVANTKVDVYSFGILMIETASSHRPNLPMKLGTDDIGMVQWARKMKENNAEMEMVDVNIGLRGEEESVKEYVRIACECTREMQKERPEMPQVVQWGLRDVNGSLSKQNVEQIILPQLNAKTKFPKTYSHYLSRMKWFRNQYNMMSTLMRNNSGFGWDPIGKTFTAHEDVWKDYLKSHPSHSKLRGKSMVDYEYLKIVVGGGVSSGNNSISVDPDDTDATTFEPENRTVGIEEFSYDPNSDTFITPNNYEPAYQPPSPNQPSPPSHPPLDSEVPIEKQNCHKRRRSEYGGSSSAVGINNQGNVLENLSVGIETIAVNFEKISNMMEKREKDRDRDRELEGIIWDVIKEIPNLDDITRFKTAELLNTKAKKDFFLKMSPEERSSWINFKLGNN 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01583 653 PANTHER OS01G0253100 PROTEIN 1 357 IPR045271 GO:0004714|GO:0006468
Gma20g01583 653 MobiDBLite consensus disorder prediction 466 534 - -
Gma20g01583 653 MobiDBLite consensus disorder prediction 512 531 - -
Gma20g01583 653 CDD STKc_IRAK 92 356 - -
Gma20g01583 653 Gene3D Phosphorylase Kinase; domain 1 45 161 - -
Gma20g01583 653 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
Gma20g01583 653 PANTHER RECEPTOR SERINE-THREONINE PROTEIN KINASE 1 357 - -
Gma20g01583 653 Gene3D Transferase(Phosphotransferase) domain 1 162 380 - -
Gma20g01583 653 Pfam Protein kinase domain 91 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01583 653 SUPERFAMILY Protein kinase-like (PK-like) 68 359 IPR011009 -
Gma20g01583 653 MobiDBLite consensus disorder prediction 494 511 - -
Gma20g01583 653 ProSiteProfiles Protein kinase domain profile. 86 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01583 653 MobiDBLite consensus disorder prediction 37 59 - -
Gma20g01583 653 Pfam Myb/SANT-like DNA-binding domain 355 435 IPR024752 -
Gma20g01583 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Gma20g01583 653 SMART serkin_6 86 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01583 Gma-Chr20 42929706 42933540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01583 71 356 Receptor kinase-like Gene Family AT5G07280 44.138 5.20e-67 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Gma20g01583 Pkinase 7.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01583 - - gmx:100305364 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01583 20 42929706 42933540 Gma20g01583 20 42929706 42933540 ECH
Gma10g02130 10 48796110 48797587 Gma20g01583 20 42929706 42933540 GST