Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01582 ATGAGTTTGAGTTTCTCTAACTTCTCCGGTCCGCGGGTCCAACGGACCAACTCCACCGCCACTTCGGCGTCACTGGCCGCCGGAGGTCTTTCCACCGGGAACCGCTTACTGCATTCGAAGTTCGTTAATCATTGCGCATTTTTGCAGCACAGGTTACCAATACAACCAGTTGCTCAGATGGATCTTCATACTGAAGAGTTGCCTCAGTACATACATATGAATCAGAATGAGTTTTGCATACGAAGGCATAAGAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAAATATGATGCTGATGACCCTGACAATGCATGTGGGGATAGCTGCCTGAATGTATTAACCAGCACTGAATGCACCCCTGGTTATTGCCCTTGTGGTGTCTTATGCAAAAATCAGAAATTTCAGAAATGTGAATATGCAAAAACAAAGTTGTTTAAAACTGAAGGCCGTGGATGGGGTCTTTTGGCTGATGAGGATATTAAGGCAGGACAATTTGTCATTGAATACTGTGGAGAAGTAATATCATGGAAAGAAGCCAAACGTAGATCCCAGGCTTATGAAAATCAAGGTCTTAAAGATGCATTTATTATTTGCCTTAATGCATCTGAATCTATTGATGCAACCAGGAAAGGAAGCCTTGCTAGATTTATAAATCATTCCTGTCAACCGAACTGTGAGACGAGAAAATGGAATGTGTTGGGGGAAATAAGAGTCGGAATATTTGCAAAACATGATATTCCTATTGGAAATGAATTAGCTTATGATTATAATTTTGAATGGTTTGGTGGTGCCAAGGTTCGTTGCCTCTGTGGTGCACTCAAATGTTCTGGATTCCTTGGAGCAAAATCTCGTGGTTTTCAACAGGAGGATACTTATCTATGGGAAGATGATGATGACAGGTATTCAGTTGAGAAAATTCCTGTATATGATTCTGCAGAGGATGAACCGGTGTCAAATTTTAATGGACAAACCGAACCCTCTTTGGATGTTATGGTTAAAGCTGAACAATTATTGGAGTCCACTGCTTTCCATGTTCAGCCCCTTGATTCAGTTCAGATGAAAGATTTAGATGTGAAGAAGATTAAAACTGATGTAGCAGATGAGCATATGAACTTGTACTACCAGGATGGTGAACAGACCCTTTCACGAAAGAATGCAATATCACGTATCCGAAGTAATACTGCAGGCAGAAACTATCTTCTTGGACCTAGGTCCATGTCTACCAAAAGATCAAGGTCATATAATGGCGTTAGGTTTAAAAATCTCACAGAGAAGAAAATCGATGCTAAGTTTGCTGCTGCCCTCCTAGCATTCAAGGAAGCACAAGAGGAGATTTTAAATTGTGAGAAAATAAAGGACGATGCTACATCTGCTCTTGATTCCTTATACGATGAAATACGGCCTGCCATTGAAGAGCACGAGAGGGATAGCCAAGACAGTGTATCCACCACTGTAGCAGAGAAGTGGATACAGGCTTGCTGCCTGAAATTGAAGGCGGAGTTTGACCTTTACTCATCAATTGTCAAAAATGTTGCTTGCACTGCGCAAAGGGCACCTGGCCAAGGAAAACCTACTGAAGTTGATAACGAAAACGAAATTAAGCTCTTGACAGGGCTTGCTTCTATGATCTGGCCTTGGTCAAGGCATTGGTACAGGGCAAGCTTTAGAAGGGATTGCAGGACATATGTTATGAAAGATATGAGTGGGAAGTTCAATTCCAGCATGAAATCAGAATCTGGATGA 1749 0.418 MSLSFSNFSGPRVQRTNSTATSASLAAGGLSTGNRLLHSKFVNHCAFLQHRLPIQPVAQMDLHTEELPQYIHMNQNEFCIRRHKKQKEEDIAICECKYDADDPDNACGDSCLNVLTSTECTPGYCPCGVLCKNQKFQKCEYAKTKLFKTEGRGWGLLADEDIKAGQFVIEYCGEVISWKEAKRRSQAYENQGLKDAFIICLNASESIDATRKGSLARFINHSCQPNCETRKWNVLGEIRVGIFAKHDIPIGNELAYDYNFEWFGGAKVRCLCGALKCSGFLGAKSRGFQQEDTYLWEDDDDRYSVEKIPVYDSAEDEPVSNFNGQTEPSLDVMVKAEQLLESTAFHVQPLDSVQMKDLDVKKIKTDVADEHMNLYYQDGEQTLSRKNAISRIRSNTAGRNYLLGPRSMSTKRSRSYNGVRFKNLTEKKIDAKFAAALLAFKEAQEEILNCEKIKDDATSALDSLYDEIRPAIEEHERDSQDSVSTTVAEKWIQACCLKLKAEFDLYSSIVKNVACTAQRAPGQGKPTEVDNENEIKLLTGLASMIWPWSRHWYRASFRRDCRTYVMKDMSGKFNSSMKSESG 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01582 582 MobiDBLite consensus disorder prediction 1 20 - -
Gma20g01582 582 Gene3D SET domain 39 298 IPR046341 -
Gma20g01582 582 Pfam SET domain 153 259 IPR001214 GO:0005515
Gma20g01582 582 ProSiteProfiles SET domain profile. 142 259 IPR001214 GO:0005515
Gma20g01582 582 SUPERFAMILY SET domain 68 279 IPR046341 -
Gma20g01582 582 PANTHER SET DOMAIN PROTEINS 36 479 - -
Gma20g01582 582 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 36 479 - -
Gma20g01582 582 SMART set_7 142 265 IPR001214 GO:0005515
Gma20g01582 582 ProSiteProfiles AWS domain profile. 89 140 IPR006560 GO:0005634|GO:0018024
Gma20g01582 582 ProSiteProfiles Post-SET domain profile. 266 282 IPR003616 -
Gma20g01582 582 SMART shorttest3 89 141 IPR006560 GO:0005634|GO:0018024
Gma20g01582 582 Pfam AWS domain 101 139 IPR006560 GO:0005634|GO:0018024
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01582 Gma-Chr20 42919648 42929511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01582 124 281 C2H2 Transcription Factor Family AT2G23740 34.831 2.94e-21 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gma20g01582 SET 5.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01582 - - gmx:100775294 965.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01582 20 42919648 42929511 Gma20g01582 20 42919648 42929511 ECH
Gma10g02131 10 48798989 48805209 Gma20g01582 20 42919648 42929511 GST