Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01580 ATGGTCACTGTTTCTGTGGGGGCTATAGCCAGCTTCTCATCATGTTCAGGTTCGGGGAAGTTCTTCGCGGCGGAGCAAGGCGGCGATGAGGAAGCGGAAGAGAGTACTGAGGTAGGTTCTGTTCCGAGCCATGTGGTGTCAGCCTCTGCAGCTTCGGCCCAAACCAATCAGTGGGTGCCGCGGGGAAGTGGTTTTCCCATGATGTCACGTTTTATGCATGCGCCTTCTCCCGTTCTGTCTTCTTCGCATCCTCATTTGGGAGTTGGCCACAAGAGAGAGCGTGAAGATGACACTGGCGCTGGTGCGAGTGGAGGTGTTGCTATTGCAGCAGCTTCTTCACAAACGCAAACACAAGAGATTGAAAGTGCTGGCGGCGACAGGAGGAGGAGATACAGGGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCAGAGATTCGCGATCCTCACAAAGCGGCGAGAGTGTGGCTTGGGACATTCGACACTGCCGAGGCTGCGGCCAGAGCCTACGATGAAGCCGCATTGAGGTTCAGAGGTAACAGAGCAAAACTTAATTTCCCCGAAAACGTTGTACCGGTTCCACCTCCTCCTCCGGTTCCCGATTTACCGGCAAGTGCGGTAGCCGGTTCCGATTCCATTTCCGGTTCCGGTTCAGTGGTGGCAGGTTTTTCGCCGACGCTGATGCAGGGAGCGCCGTTTCAGGGCTCCTCTGCTTTTCTGAGAGATTATTGGGGGTATTCTCAGCTGCTGAGGAGTACAGGGGACTTCCATGGACTCGACCAGTGGTTCTTTGATTCTCAAATGGCAGCGTTTCAATCTTCTTCATCGTCGTTGTTGCCATCGCCGCCGCCGCCGTCGTTTTCGCCTTCCTCTGCTTCGTATCCTCTGTTTTCTTCCAGCCAGCAAATGGGGATTTTCCGGCCGCCGGGAGAGCAGGGTCATGGCGGAGAAGACGGTGGTAGTGGGTCAGAGTTTTCGGAGCTTCCACCTTCGACGTGGTCAGATACCAGTGGCTATCCTCCTCCACCACCTGATTATTTGGAGTCCAGTTCACTGAATTTTTATGTGGTTTTGGGTTAA 1080 0.5491 MVTVSVGAIASFSSCSGSGKFFAAEQGGDEEAEESTEVGSVPSHVVSASAASAQTNQWVPRGSGFPMMSRFMHAPSPVLSSSHPHLGVGHKREREDDTGAGASGGVAIAAASSQTQTQEIESAGGDRRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVVPVPPPPPVPDLPASAVAGSDSISGSGSVVAGFSPTLMQGAPFQGSSAFLRDYWGYSQLLRSTGDFHGLDQWFFDSQMAAFQSSSSSLLPSPPPPSFSPSSASYPLFSSSQQMGIFRPPGEQGHGGEDGGSGSEFSELPPSTWSDTSGYPPPPPDYLESSSLNFYVVLG 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01580 359 MobiDBLite consensus disorder prediction 274 293 - -
Gma20g01580 359 Gene3D AP2/ERF domain 129 189 IPR036955 GO:0003700|GO:0006355
Gma20g01580 359 PRINTS Ethylene responsive element binding protein signature 131 142 IPR001471 GO:0003700|GO:0006355
Gma20g01580 359 PRINTS Ethylene responsive element binding protein signature 153 169 IPR001471 GO:0003700|GO:0006355
Gma20g01580 359 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 37 308 - -
Gma20g01580 359 SUPERFAMILY DNA-binding domain 130 188 IPR016177 GO:0003677
Gma20g01580 359 PANTHER DNA-BINDING DOMAIN 37 308 IPR044808 GO:0003700|GO:0009873
Gma20g01580 359 CDD AP2 138 189 IPR001471 GO:0003700|GO:0006355
Gma20g01580 359 MobiDBLite consensus disorder prediction 80 132 - -
Gma20g01580 359 MobiDBLite consensus disorder prediction 304 346 - -
Gma20g01580 359 Pfam AP2 domain 130 179 IPR001471 GO:0003700|GO:0006355
Gma20g01580 359 ProSiteProfiles AP2/ERF domain profile. 130 187 IPR001471 GO:0003700|GO:0006355
Gma20g01580 359 SMART rav1_2 130 193 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01580 Gma-Chr20 42887819 42889147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01580 121 190 AP2-EREBP Transcription Factor Family AT5G61890 78.571 3.98e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma20g01580 AP2 6.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01580 - - gmx:100802242 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01580 20 42887819 42889147 Gma20g01580 20 42887819 42889147 ECH
Gma10g02135 10 48834682 48836248 Gma20g01580 20 42887819 42889147 GST
Gma16g01476 16 34013840 34016131 Gma20g01580 20 42887819 42889147 PCT
Gma02g00722 02 6952675 6954960 Gma20g01580 20 42887819 42889147 PCT
Gma20g01580 20 42887819 42889147 Gma16g01476 16 34013840 34016131 PCT
Gma20g01580 20 42887819 42889147 Gma02g00722 02 6952675 6954960 PCT