Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01577 ATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCATTCTTGGGTTACAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAAGCTTCACAAGAAGGAAACATGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTCCCCGTGGTCTCCGAACATTGAACACTGTATGGGCTCAGCACTTGAGTGAGGAACTGAAACGTAGGTTTTATAAGAACTGGTGCAAGTCCAAGAAGAAGGCCTTCACCAAGTACTCAAAGCAGTATGAAACTGAGGAGGGAAAGAAAAACATTGAGGCACAGCTGGAGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACCCAGATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTCAGGTTAATGGTGGTACTATTGCACAGAAGGTGGACTTTGCATACAGTTTCTTTGAGAAACAGGTTCCTATTGATGCCGTGTTCCAGAAGGATGAGATGATTGACATCATTGGTGTGACCAAGGGTAAGGGTTATGAGGGTGTTGTCACTCGTTGGGGTGTTACCCGCCTTCCCCGTAAGACTCACAGAGGCTTGAGGAAGGTTGCTTGTATTGGTGCCTGGCATCCTGCAAGAGTTTCATTCACTGTTGCCAGGGCTGGTCAGAATGGATACCACCACCGAACAGAGTTGAACAAGAAGGTTTACAAGCTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGGACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGTTAAGGATGATTATATCATGGTCAAGGGATGCTGCGTTGGTCCCAAGAAAAGGGTTATTACATTGCGCCAATCCCTCCTTAAGCAGACTTCTCGTGTTGCTCTGGAGGAGATCAAGCTCAAGTTTATCGACACCTCTTCAAAGTTTGGGCATGGTCGCTTCCAGACCACACAGGAGAAGCAGAAGTTCTTTGGACGCCTCAAAGCATAA 1170 0.4718 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKAPKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGLRTLNTVWAQHLSEELKRRFYKNWCKSKKKAFTKYSKQYETEEGKKNIEAQLEKLKKYATVVRVLAHTQIRKMKGLKQKKAHIMEIQVNGGTIAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKVYKLGKAGDESHSALTEFDRTEKDITPIGGFPHYGVVKDDYIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFFGRLKA 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01577 389 PANTHER 60S RIBOSOMAL PROTEIN L3-LIKE 1 389 - -
Gma20g01577 389 Gene3D Ribosomal protein L3, domain 3 1 274 IPR044892 -
Gma20g01577 389 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 389 IPR045077 GO:0003735|GO:0005840|GO:0006412
Gma20g01577 389 SUPERFAMILY Translation proteins 4 370 IPR009000 -
Gma20g01577 389 Pfam Ribosomal protein L3 1 370 IPR000597 GO:0003735|GO:0005840|GO:0006412
Gma20g01577 389 MobiDBLite consensus disorder prediction 1 37 - -
Gma20g01577 389 ProSitePatterns Ribosomal protein L3 signature. 212 235 IPR019926 -
Gma20g01577 389 Gene3D - 83 207 - -
Gma20g01577 389 Gene3D Translation factors 44 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01577 Gma-Chr20 42858019 42860509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01577 1 387 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 86.047 0.0 698
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01577 K02925 - gmx:100819132 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01577 20 42858019 42860509 Gma20g01577 20 42858019 42860509 ECH