Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01567 ATGTCCTTCCGCAGCATAGTTCGTGATGTAAGGGATGGCTTTGGAAGCCTATCAAGGAGAAGTTTTGAGGTAAGGCTTCCTGGCCATAACAGGGGCAAGTCACGCAGTTCGGTCCACGAGTTGCAGGATCAGCCACCGGTTATACAGAACAGCCGGTGGGCTAGCCTTCCTCCGGAGCTTCTTCGTGATGTTATTAATAGATTGGAAGCAAGCGAGAGTACATGGCCTGGTCGTAAGCATGTGGTTGCATGTGCTGCCGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTCAGCAGTCCTGAATTCTGTGGGAAGATTACTTTCCCTGTTTCCTTGAAGCAGCCTGGGCATAGGGATGGACCCATTCAGTGTTTCATCAAGAGAGACAAATCTAAGCTGACATACCACCTCTTCCTTTGCCTTAGTCCTGCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGGACAAGAAGAACAACTTGCACAGAGTATATTATATCAATGGATGCAGATAACATATCGAGATCTAGTAGTACTTACATTGGAAAACTGAGGTCAAATTTTCTTGGCACCAAGTTTATAATTTATGATACACAACCTCCCTACCACAATGCTATGCTGTCTCCACCTGGCCGCAGCCGTAGGTTTTCAAAAAAGGTTTCTCCAAAGGTCCCTAGTGGCAGCTACAATATTGCCCATGTCACCTATGAGTTGAATGTCCTTGGTACTAGGGGGCCACGAAGGATGAATTGCACAATGTACTCAATTCCTGCATCATCCATGGAGCCTAATGGCATTGTCCCGGGCCAGCCAGAGCTCCTTCCCCGTGCCCTTGAGGATTCTTTCCGGAGTATATCCTTCTCAAAATCAATTGACAATTCAACTGAGTTTAGCAGCTCTAGATTCTCCGACATCATGGGGATTGGCAATGAAGATGAGGAGGGAAAGGTAAGACCACTAGTTCTCAAGAACAAGTCTCCAAGGTGGCATGAACAGCTGCAATGTTGGTGCCTCAACTTTAGAGGAAGGGTCACTGTTGCCTCTGTCAAGAATTTTCAGCTGATTGCTGCGACACCACCACCAGCCATTGTTACTACAGGAACAGGACCTACACCATCTCAGCCAACACAATCTTCTTCTGACCCTGACAAGATCATTCTTCAGTTTGGCAAGGTTGGCAAGGATATGTTTACAATGGACTATCGATACCCCCTCTCTGCATTTCAGGCTTTTGCCATATGCTTGACTAGCTTTGATACAAAACTGGCTTGTGAATAG 1293 0.4625 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHNRGKSRSSVHELQDQPPVIQNSRWASLPPELLRDVINRLEASESTWPGRKHVVACAAVCKSWREMCKEIVSSPEFCGKITFPVSLKQPGHRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYHNAMLSPPGRSRRFSKKVSPKVPSGSYNIAHVTYELNVLGTRGPRRMNCTMYSIPASSMEPNGIVPGQPELLPRALEDSFRSISFSKSIDNSTEFSSSRFSDIMGIGNEDEEGKVRPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATPPPAIVTTGTGPTPSQPTQSSSDPDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01567 430 MobiDBLite consensus disorder prediction 372 387 - -
Gma20g01567 430 Gene3D - 48 101 - -
Gma20g01567 430 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Gma20g01567 430 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Gma20g01567 430 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Gma20g01567 430 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Gma20g01567 430 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Gma20g01567 430 PRINTS Tubby superfamily signature 387 406 IPR000007 -
Gma20g01567 430 PRINTS Tubby superfamily signature 408 430 IPR000007 -
Gma20g01567 430 PANTHER TUBBY-RELATED 1 430 - -
Gma20g01567 430 Pfam Tub family 114 425 IPR000007 -
Gma20g01567 430 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Gma20g01567 430 Gene3D Tubby Protein; Chain A 110 430 IPR025659 -
Gma20g01567 430 Pfam F-box domain 53 100 IPR001810 GO:0005515
Gma20g01567 430 SUPERFAMILY Tubby C-terminal domain-like 102 430 IPR025659 -
Gma20g01567 430 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 430 - -
Gma20g01567 430 MobiDBLite consensus disorder prediction 368 387 - -
Gma20g01567 430 ProSitePatterns Tub family signature 2. 415 430 IPR018066 -
Gma20g01567 430 ProSitePatterns Tub family signature 1. 345 358 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01567 Gma-Chr20 42750406 42754759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01567 1 430 TUB Transcription Factor Family AT1G76900 69.063 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gma20g01567 Tub 1.5e-114 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01567 K19600 - gmx:100817532 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01567 20 42750406 42754759 Gma20g01567 20 42750406 42754759 ECH
Gma10g02147 10 48961840 48965916 Gma20g01567 20 42750406 42754759 GST
Gma16g01492 16 34271529 34277717 Gma20g01567 20 42750406 42754759 PCT
Gma02g00735 02 7109355 7114740 Gma20g01567 20 42750406 42754759 PCT
Gma20g01567 20 42750406 42754759 Gma16g01492 16 34271529 34277717 PCT
Gma20g01567 20 42750406 42754759 Gma02g00735 02 7109355 7114740 PCT