Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01566 ATGGAGCTAATTGGAGACACTACCACAGTCATGGAAACGTCGTCCGGTGAGGCTGTGGCGGCGCATGACGGTGGCGAGGTGATTATGATGGATGCAAATTCCGGTGAAGAAGAGAATAATAATAAGGGAGAAGAAGGAGAAGAAGAAGAAGAAGGTGACAATAAGATCAACAGTAACAACAACTCATTATGCGGTGGAAACAGATGGCCCCGCCAAGAAACTTTGGCTCTCTTGAAGATAAGGTCCGATATGGATGCTGTGTTTCGAGATTCAAGTCTTAAGGGTCCACTCTGGGAAGAAGTTGCAAGGAAACTATCAGAACTGGGTTACCACCGAAGCGCAAAGAAGTGCAAGGAGAAATTCGAGAATGTATACAAGTACCACAAAAGAACCAAAGAGAGCAGAAGTGGGAAACACGAGGGAAAAACCTACAAGTTTTTTGATCAATTACAAGCCCTCGAGAACCAATTCACAGTCTCTTACTCTCCAAAACCACAACCCACTTTGGCAACAACAACAAACATAATAACATTACCACCCCCAACAAGGCCTAGTGACACAACAGCAATCTCTTATGTCACCACCACTGTTCCATCCACAAACCCTACAATCATATCACCTTCACCACAACCACCAACCCATGCCACCACCACAACTACCATCACTTCTCCAACAGTAGCAACCAACCCTAAAAACCCTCCACAATCCAACAACAACAGCAACATCCCCAATTACTCTTTGCTCAACATGAACAACCTCTTCTCCACCACTTCAACCTCTTCGTCCACGGCCTCGGATGAGGACTTGGAAGAGAAGTACCGTAAGAAGAGAAAGTGGAAGGACTACTTCAGGAGGCTCACGAGGCAAGTCTTGGCCAAGCAAGAGGAAATGCAGAAGAGGTTCCTCGAAGCCATTGACAATAGGGAGAGAGAACAAGTGGCGCAACAAGAGGCTTGGAGGATCCAAGAAATGGCAAGGATCAATAGAGAACACGAACTTCTTGTCCAAGAAAGATCAACCGCAGCAGCAAAAAATGCAGCAGTTATTGCTTTTTTGCAACAGTTATCTGGTCAACACCAAAATTCCACCACAACAAAAGCTGGTGCCAATTTCCTTCAacaaccacttccacaacaagtacaaccaccaccacaacaagctccaCAACCACTGATGATGTCAAATAATAACAACATTGAAATTCAGAaaatgaataatggtcacagtgttgttgctgctgctactcctactactgtcgttgctgctactgctattgctactacagctgttactactactccttcttcattgagctctttatcttcttctaggtggccaaagACAGAAGTTCATGCTTTGATAAGATTGAGGACGAGTCTTGAAGCAAAGTACCAAGAAAATGGGCCAAAGGCTCCATTCTGGGAGGATATATCAGCAGGAATGCTGAGACTAGGGTACAACAGAAGTGCCAAGAGGTGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAGGTCAAAGAGAGCAACAAGCAAAGGCGCGAGGATAGTAAGACATGTCCTTATTTTCATGAACTTGAAGCTCTATACAAAGAAAAGAGCAAGACTACTCAGAACCCCTTTGGCGCTTCGTTCCACAACATGAAGCCACATGAGATGATGGAGCCATTGATGGTGCAACCGGAGCAGCAATGGAGACCTCCCACTCAATATGAACAAGGTGCAGCCAAGGAGAACAATAATAGTGAAAGAAAAGAAAGAGAGGAGGAGGAAGAAGAAGAAGATGATGATGAAAATGAAGAGGGAGATCTAGAGAGTGTGGAAGATGAAGGAGGTAACCGTTATGAGATTGCGACAAATAAACTTTCTTCAGTGGACACCGTTGAATGA 1893 0.4025 MELIGDTTTVMETSSGEAVAAHDGGEVIMMDANSGEEENNNKGEEGEEEEEGDNKINSNNNSLCGGNRWPRQETLALLKIRSDMDAVFRDSSLKGPLWEEVARKLSELGYHRSAKKCKEKFENVYKYHKRTKESRSGKHEGKTYKFFDQLQALENQFTVSYSPKPQPTLATTTNIITLPPPTRPSDTTAISYVTTTVPSTNPTIISPSPQPPTHATTTTTITSPTVATNPKNPPQSNNNSNIPNYSLLNMNNLFSTTSTSSSTASDEDLEEKYRKKRKWKDYFRRLTRQVLAKQEEMQKRFLEAIDNREREQVAQQEAWRIQEMARINREHELLVQERSTAAAKNAAVIAFLQQLSGQHQNSTTTKAGANFLQQPLPQQVQPPPQQAPQPLMMSNNNNIEIQKMNNGHSVVAAATPTTVVAATAIATTAVTTTPSSLSSLSSSRWPKTEVHALIRLRTSLEAKYQENGPKAPFWEDISAGMLRLGYNRSAKRCKEKWENINKYFKKVKESNKQRREDSKTCPYFHELEALYKEKSKTTQNPFGASFHNMKPHEMMEPLMVQPEQQWRPPTQYEQGAAKENNNSERKEREEEEEEEDDDENEEGDLESVEDEGGNRYEIATNKLSSVDTVE 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01566 630 Coils Coil 573 611 - -
Gma20g01566 630 MobiDBLite consensus disorder prediction 1 67 - -
Gma20g01566 630 SMART sant 65 127 IPR001005 -
Gma20g01566 630 SMART sant 441 503 IPR001005 -
Gma20g01566 630 CDD GT1 444 508 - -
Gma20g01566 630 ProSiteProfiles Myb-like domain profile. 67 125 IPR001005 -
Gma20g01566 630 MobiDBLite consensus disorder prediction 200 247 - -
Gma20g01566 630 Pfam Myb/SANT-like DNA-binding domain 443 530 IPR044822 -
Gma20g01566 630 Pfam Myb/SANT-like DNA-binding domain 67 153 IPR044822 -
Gma20g01566 630 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 4 620 - -
Gma20g01566 630 MobiDBLite consensus disorder prediction 565 630 - -
Gma20g01566 630 MobiDBLite consensus disorder prediction 588 608 - -
Gma20g01566 630 PANTHER - 4 620 - -
Gma20g01566 630 CDD GT1 67 132 - -
Gma20g01566 630 ProSiteProfiles Myb-like domain profile. 437 501 IPR001005 -
Gma20g01566 630 MobiDBLite consensus disorder prediction 210 247 - -
Gma20g01566 630 Gene3D - 445 506 - -
Gma20g01566 630 Gene3D - 69 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01566 Gma-Chr20 42729286 42732538 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01566 65 565 Trihelix Transcription Factor Family AT1G76890 49.133 7.41e-145 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gma20g01566 Myb_DNA-bind_4 8.4e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01566 - - gmx:100799041 979.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01566 20 42729286 42732538 Gma20g01566 20 42729286 42732538 ECH
Gma10g02148 10 48983476 48986219 Gma20g01566 20 42729286 42732538 GST
Gma16g01494 16 34330920 34333946 Gma20g01566 20 42729286 42732538 PCT
Gma02g00737 02 7144262 7147474 Gma20g01566 20 42729286 42732538 PCT
Gma20g01566 20 42729286 42732538 Gma16g01494 16 34330920 34333946 PCT
Gma20g01566 20 42729286 42732538 Gma02g00737 02 7144262 7147474 PCT