Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01565 ATGCTCGGGGACTCAGCTCTGTTGGGAGGAGGAGGAGGAGAAGGTGGTGCCTCCGCCGATGTAGTGGCGGCGACCGCCACGCATGATGCGACAACGACGACGACGACCGGAGGAGGCGGTGGCGGATCAAATAATTCGGGGGACGATGAGAGGGGTAGAATCGAAGAAGGTGAACGTAGCTTCGGCGGTAACCGGTGGCCGCGACAAGAGACTTTGGCTTTGTTAAGGATACGCTCCGACATGGACGTGGCGTTTCGAGATGCAAGTGTTAAAGGTCCCTTGTGGGAAGAAGTATCCAGGAAAATGGCAGAGCTTGGGTATCACAGAAGCTCCAAGAAGTGCAAAGAAAAATTCGAGAACGTGTACAAGTACCACAAGAGAACCAAAGAAGGTCGAAGTGGGAAACAAGATGGAAAAACATATCGTTTCTTTGATCAACTACAAGCCCTTGAGAACCACTCTCCAACACCCCATTCCCCCAACCCTTCATCAAAACCACTACAATcagcaccatcaagagtagtagcaacaacaactgcatcatcaatgtcactaccaattccaacaccaacaacaacagtgccaatgcagccaataTTGTCCAACACTATACCCACAAGTAGTGTCCCCAATATCACTGTTCCATCAACAACAATACTCCCTATAACCATACCTCAACCCATTCTCACCACCCCATCAATAAACCTCACAATCCCTTCTTACCCTCCATCAAACCCTACCAATTTCCCACCGCCATCAAACCCTACCCCACCACTCTCTTTCCCCACCGACACCTTCTCCAATTCCACCTCCTCCTCCTCCACCTCCTCCGACGAAACATTGGAAAGGAGACGCAAGAGGAAGCGCAAATGGAAGGATTTCTTCGAGAGACTGATGAAGGAAGTGATCGAGAAGCAAGAGGAGCTACAAAAGAAGTTCTTGGAAGCAATAGAGAAACGCGAACACGACAGAATAGCAAGAGAAGAAGCATGGAGAGTACAAGAGATGCAAAGAATCAATAGAGAAAGAGAAATCTTAGCACAAGAAAGGTCCATAGCCGCAGCCAAAGACGCAGCCGTTATGTCATTCCTTCAAAAAATAGCCGAACAACAAAACCTCGGTCAAGCGTTGACCAACATCAACCTCgtacaaccacaaccacaactacaaccacaaccaccggtacaacaacaaGTGACACCACCTAATATAGTACCAGCTCCTATGCAACAACCACTGCCTGTGATTGTTACACAGCCTGTGGTGTTGCCAGTGGTATCACAAGTGACCAATATGGAGATAATGAAAGCCGATAATAATAACAACAATAACAATAATAACAACTGCGAAAATTTCTTGCCACCGAGTTCTTCTCGGTGGCCGAAAGTGGAGGTTCAGGCATTGATAAAGCTTCGAACGAGCATGGATGAGAAGTATCAAGAGAATGGACCAAAGGGTCCCCTCTGGGAGGAGATCTCAGCCTCAATGAAGAAGCTGGGGTACAACCGAAACGCGAAAAGGTGCAAGGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAAAGCAACAAGCGGAGACCGGAAGATTCCAAGACGTGCCCTTATTTCCACCAGCTGGACGCGCTGTACAGGCAGAAGCACAAAGCCGAAGAGAGCACCGCGGCGGCGAAGGCGGAGAGCGCGGTGGCACCGTTGATGGTGCAGCCGGAGCAGCAATGGCCACCTCAGCAGCAGGATGATAGGGACATCACAATGGAAGACATGGAGAACGAAGATGATGAATATGAGGAAGAGAGGGAAGGAGAGGAAGAAGAAGAAGAGGATGAAGAGGATGAAGAAGGTGGTGGTGGGAACTATGAGATAGTGGCAAACAAAACAAGTGGCGGTGGTGGTGCTGCTGCTTCAGTGGGGGCTTCAACGGAGTAG 1935 0.4579 MLGDSALLGGGGGEGGASADVVAATATHDATTTTTTGGGGGGSNNSGDDERGRIEEGERSFGGNRWPRQETLALLRIRSDMDVAFRDASVKGPLWEEVSRKMAELGYHRSSKKCKEKFENVYKYHKRTKEGRSGKQDGKTYRFFDQLQALENHSPTPHSPNPSSKPLQSAPSRVVATTTASSMSLPIPTPTTTVPMQPILSNTIPTSSVPNITVPSTTILPITIPQPILTTPSINLTIPSYPPSNPTNFPPPSNPTPPLSFPTDTFSNSTSSSSTSSDETLERRRKRKRKWKDFFERLMKEVIEKQEELQKKFLEAIEKREHDRIAREEAWRVQEMQRINREREILAQERSIAAAKDAAVMSFLQKIAEQQNLGQALTNINLVQPQPQLQPQPPVQQQVTPPNIVPAPMQQPLPVIVTQPVVLPVVSQVTNMEIMKADNNNNNNNNNNCENFLPPSSSRWPKVEVQALIKLRTSMDEKYQENGPKGPLWEEISASMKKLGYNRNAKRCKEKWENINKYFKKVKESNKRRPEDSKTCPYFHQLDALYRQKHKAEESTAAAKAESAVAPLMVQPEQQWPPQQQDDRDITMEDMENEDDEYEEEREGEEEEEEDEEDEEGGGGNYEIVANKTSGGGGAAASVGASTE 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01565 644 CDD GT1 458 523 - -
Gma20g01565 644 CDD GT1 64 129 - -
Gma20g01565 644 MobiDBLite consensus disorder prediction 239 286 - -
Gma20g01565 644 Pfam Myb/SANT-like DNA-binding domain 64 150 IPR044822 -
Gma20g01565 644 Pfam Myb/SANT-like DNA-binding domain 458 545 IPR044822 -
Gma20g01565 644 ProSiteProfiles Myb-like domain profile. 64 122 IPR001005 -
Gma20g01565 644 SMART sant 456 518 IPR001005 -
Gma20g01565 644 SMART sant 62 124 IPR001005 -
Gma20g01565 644 MobiDBLite consensus disorder prediction 260 277 - -
Gma20g01565 644 Coils Coil 588 615 - -
Gma20g01565 644 MobiDBLite consensus disorder prediction 25 43 - -
Gma20g01565 644 MobiDBLite consensus disorder prediction 165 190 - -
Gma20g01565 644 MobiDBLite consensus disorder prediction 243 259 - -
Gma20g01565 644 MobiDBLite consensus disorder prediction 48 63 - -
Gma20g01565 644 MobiDBLite consensus disorder prediction 587 619 - -
Gma20g01565 644 Gene3D - 460 521 - -
Gma20g01565 644 Gene3D - 66 127 - -
Gma20g01565 644 Coils Coil 292 319 - -
Gma20g01565 644 MobiDBLite consensus disorder prediction 1 68 - -
Gma20g01565 644 MobiDBLite consensus disorder prediction 569 644 - -
Gma20g01565 644 ProSiteProfiles Myb-like domain profile. 458 516 IPR001005 -
Gma20g01565 644 Coils Coil 542 562 - -
Gma20g01565 644 MobiDBLite consensus disorder prediction 151 190 - -
Gma20g01565 644 PANTHER - 2 628 - -
Gma20g01565 644 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 2 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01565 Gma-Chr20 42700743 42703665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01565 55 576 Trihelix Transcription Factor Family AT1G76880 49.907 3.87e-154 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gma20g01565 Myb_DNA-bind_4 1.7e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01565 - - gmx:100817001 905.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02149 10 49002159 49004993 Gma20g01565 20 42700743 42703665 GST
Gma16g01495 16 34356242 34359871 Gma20g01565 20 42700743 42703665 PCT
Gma02g00738 02 7161592 7165566 Gma20g01565 20 42700743 42703665 PCT
Gma20g01565 20 42700743 42703665 Gma16g01495 16 34356242 34359871 PCT
Gma20g01565 20 42700743 42703665 Gma02g00738 02 7161592 7165566 PCT