Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01564 ATGCGACACCAACTTGCCTTGGGTGGGACCCACCAGATCTCCCAATACATTGAACCTGTTAAGTTTTCTCAGCCTTTCTTCAAACTCTTTCTCTGCGTGATAGATGTGTTTCTCCTGATCTTCAGCTCTGGATTCTGGGCTTGGTTGCAAAAAGGTAATTTGCCACAGGGAGGTATAATTCAAGGTGGAACTTCTTTTGGTGGCTTTGATTTGCCGATTCGGGTTCAGCATCAAGCACAGCATCCCCATACAATGCACCAACATCAAACTCATCCGCGTCAAGGGTCTTCTGTACATTCCACCGTTCATGATGGGTTTCCACTTACAATGGGAACCATGCAGAACTGTGACCAAACCATTTCATTGACTGACTTTAGTAAAGGAGACAGAAGCAAAAACTCAGCGAGTGAGGAAGATGAGCCGAGCTATACTGAGGATGGTGTTGATTGTCACCATGAAACAACTAGAGGGAAGAAAGGATCACCTTGGCAGCGTGTGAAGTGGACTGATAAGATGGTAAGGCTTCTGATAACAGCTGTTTCTTATATAGGCGAGGATGTAACTGCTGATGGTGGTAGCAGCGGAAGAAGAAAGTTTGCAGTCTTACAGAAGAAGGGTAAGTGGAAATCTGTTTCCAAGGTCATGGCTGAAAGGGGTTATCATGTTTCGCCTCAGCAATGTGAGGATAAATTCAATGACCTTAATAAAAGGTATAAAAAGCTTAATGATATGCTAGGGAGGGGTACTTCTTGTCAGGTTGTTGAAAATCCTGCACTGTTGGATGTAATAGATTTTCTTTCCGAGAAAGAAAAAGACGACGTCCGGAAAATATTGAGCTCAAAACACTTGTTCTATGAAGAGATGTGTTCTTATCATAATGGTAACAGGTTGCATTTACCCCATGATCCTGCATTGCAACGTTCACTGCAGTTAGCTCTCCGAaatagagacgatcatgatgatgatatcagaaggtcccatcatgatgatcatgatgaagatgatcaagatgcggaaattgatgatcatgatgactttgaagagaattgtgcttctcatggtgatagtagaggaatatatGGGCCATCAGGCGGATCTATGAAGAAATTGAAACAATGCCAAGGCCAAGAAGATGCTAATACTTTTGGCATGAGAGCAGCTTGGTTACAGAAGCAATGGGTTGAATCTCACACCCTTCAGTTAGAAGAACAAAAGCTACAAATTCAGGTCGAGATGCTGGAACTAGAGAAACAGAGATTCAAGTGGCAGAGGTTTAGTAAGAAAAAGGATCGGGAGTTGGAGAAGCTGAGCCTAGAAAATGAAAGAATGAAGCTTGAAAATGAACGTATTGCTTTAGAACTGAAGCGAAAGGAAATGGGCACTGGCTTTAAATAG 1395 0.3878 MRHQLALGGTHQISQYIEPVKFSQPFFKLFLCVIDVFLLIFSSGFWAWLQKGNLPQGGIIQGGTSFGGFDLPIRVQHQAQHPHTMHQHQTHPRQGSSVHSTVHDGFPLTMGTMQNCDQTISLTDFSKGDRSKNSASEEDEPSYTEDGVDCHHETTRGKKGSPWQRVKWTDKMVRLLITAVSYIGEDVTADGGSSGRRKFAVLQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLDVIDFLSEKEKDDVRKILSSKHLFYEEMCSYHNGNRLHLPHDPALQRSLQLALRNRDDHDDDIRRSHHDDHDEDDQDAEIDDHDDFEENCASHGDSRGIYGPSGGSMKKLKQCQGQEDANTFGMRAAWLQKQWVESHTLQLEEQKLQIQVEMLELEKQRFKWQRFSKKKDRELEKLSLENERMKLENERIALELKRKEMGTGFK 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01564 464 Gene3D - 168 240 - -
Gma20g01564 464 Coils Coil 396 418 - -
Gma20g01564 464 MobiDBLite consensus disorder prediction 320 339 - -
Gma20g01564 464 Coils Coil 426 458 - -
Gma20g01564 464 MobiDBLite consensus disorder prediction 130 161 - -
Gma20g01564 464 Pfam Myb/SANT-like DNA-binding domain 165 291 IPR044822 -
Gma20g01564 464 MobiDBLite consensus disorder prediction 346 369 - -
Gma20g01564 464 PANTHER FACTOR, PUTATIVE-RELATED 384 463 - -
Gma20g01564 464 PANTHER FACTOR, PUTATIVE-RELATED 51 379 - -
Gma20g01564 464 MobiDBLite consensus disorder prediction 123 161 - -
Gma20g01564 464 PANTHER F16F4.11 PROTEIN-RELATED 384 463 - -
Gma20g01564 464 PANTHER F16F4.11 PROTEIN-RELATED 51 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01564 Gma-Chr20 42678482 42681192 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gma20g01564 Myb_DNA-bind_4 5.1e-24 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01564 - - gmx:100816474 752.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01564 20 42678482 42681192 Gma20g01564 20 42678482 42681192 ECH
Gma10g02150 10 49025757 49028005 Gma20g01564 20 42678482 42681192 GST
Gma16g01496 16 34390189 34391520 Gma20g01564 20 42678482 42681192 PCT
Gma02g00739 02 7189008 7190041 Gma20g01564 20 42678482 42681192 PCT
Gma20g01564 20 42678482 42681192 Gma16g01496 16 34390189 34391520 PCT
Gma20g01564 20 42678482 42681192 Gma02g00739 02 7189008 7190041 PCT