Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01561 ATGGGGAAGAAGAAGCCGACGGCGAGGGACGAAGAGAACGCGGTACAGCAAGGCGGCGGCGGTAAATCGAAGAAGAAGGCAGTGTTAATCGACGACGACGAGTATTCCATCGGAACGGAGCTCTCCGAGGAGCCGGCGCCGGCTTCCGAGGAGAAACCCGTCGTGGCGGGAAAGAAGAAAGGTAAGAAAGGTAATGCTAAAGCCAAGAGTAATGATGATGATGTTGATGAGGATGAAGATGATCCTGAAATTGTGTTTGCTGGGAAGAAGAAGGGGAAGAATAAGAAAGGTGGTGGGAGCAGTGCGTTCACTGCTTCTGGCTTTGATTTGCTCGGTGATGAGAGGGATGATGATGAAGAGAAATCCGGGTTAACCGGTGAGGTTGATGGTGAGGAAGAGGATGAACCTGTGGTTAGTTTTACGGGGAAGAAGAAGGCATCGAAGAAAGAAGGTGGTAGTTTGTTCAGTGCATCTGCTTTTGATGCTATTGATGATGGTGAGGAGGAGGATGGGCCAGTGATTAGTTTTAAAGGCAAGAAGAAGTCCTCTAAGGGTTCGAAGAAAGGCGGTGGCAGTTTGTTCTCTGCCTCGGCTTTTgatgctattgatgacgatgcggatggtgaggtggtggatgataagaatgacgatgttgatgatgatgaGCCTGTTATTGCTTTCACTGGGAAGAAGAAGTCTTCCAAAGGAGGTAAGAAGGGTGGTTCAGTGTTTTCAGCTGCTGTTCTtggtgagattgatgatggagaggagaataaggatgatggtggtggtgatgatgatgatgacgatattggaccgatcacTTTCTCTGGTAAGAAAAAGAAGTCTTCCCAAAAGGCTGCTAATTCTGTTAGCAAAGGTGCTTCTGTTGAGGAAGGTGATGACAAAGATGAGGATGATGTTTCGTTAGTTGCATTTTCAGGTAAAAAGAAGTCTTCTAAAAAGAAGGGCAGTAGTACTGCTGCCAAAGGGAGTGATGAAAATATGGATGCAGTGGATCCTGAGGCACCCAGTGTTGGTAGTACTGATGCTGGCAACAGCAATGTAAATAAGAGTGAAGAGGTCGCTGGAAATTCCAAAAATAAAAAGAAGAATAAGAAGAAGAGTGGAAGAACTGCTCAAGAGGAGGAAGATTTGGACAAACTTCTTGCAGAGCTTGGTGAGACCCCTCCTGTACCAAAACCCTCAACTCCACCCCAGGATGATAAAGTTCAGCCTACTCCTGAAGTTGTACTGGTTGCTGATGCTTCGGGGGAAAAGGAGGGTGAAGAGGAGACTGTAGACACagctgctgcaaagaagaagaagaagaaaaaggaaaaggagaaggagaagaaggcagctgcggcggcagcagcagcagcagcagcagtagcaggaactgtaccagaaaatgaaacagcagaagATAAAGCTGAGGTAATTGAACCAAAGAAGAATGATTCAAAGGCTAAAAAAGCAGCTGATAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAGGCACTAGCTCGAAGACAAGAGGCTGAAGAAAGGAAGAAAAGAGAAGAGGAGGAAAGGTTAAGGAAGGAGGAAGAGGAGCGACGTAGGCAAGAGGAACTTGAGAGACAAGCAGAAGAGGCTAGACGTAGAAAGAAGGAAAGAGAAAAGGAAAAACTCCAGAAAAAAAAGCAAGAAGGTAAACTGTTAACTGGTAAGCAGAAGGAAGAAGCCCGTCGTCTAGAGGCAATGAGGAAGCAGATTCTCAATAACACAGGGGGCATGACTCTCCCTGGTGGGGACTCTGGTGCTCCAGCCAAAAAACCCATATATCAAACGAAGAAGGTAAAACCAAATAACCGTAATCAGAATGGTGCTGCTGCTGCTCAGATTGCTGAAAGTGTTGAAGCAAAGGAGACTGCCACTGATGTAGCTTCAGAGGAACCAGAAAAGATTGAAGAAGTGGAGTCAGTCCAGGTGGATGACAAAGTTGAACTTCCTGTAGCTGTTGAAGAGGATGGTGAGGAAGATGATGACGAGGATGAATGGGATGCAAAAAGCTGGGATGATGTTAATCTCAATACGAAAGGTGCATTTGCTGATGAAGAGGCTGACTCAGAGCCTAAACCTATCGTCAAGAAGGAGATAAAAAATGCTGTACCTGCTCAGAATGCTGGTGCTACTAAGCCTGTGGCTGAAGAAATTGAAAATGGAAAGCAGATTAATCCTCACTTGAATAGGGAACCAAGAAAGTCTGTTGTGCCTCCTAAACCTAGTGATGAGAACCTCCGCTCCCCAATTTGCTGTATCATGGGGCATGTGGATACTGGCAAAACCAAGCTGCTGGATTGTATTCGAGGTACTAATGTTCAGGAGGGTGAGGCTGGTGGCATCACACAACAGATTGGTGCTACATACTTCCCGGCTGAGAACATACGGGAAAGAACGAAGGAACTGAAAGCTGATGCAAAGCTGAAAGTTCCCGGTCTACTGGTTATTGATACCCCAGGGCACGAGTCATTTACAAACCTAAGGTCTCGGGGTTCAGGTCTATGTGATATTGCAATTTTGGTTGTTGACATTATGCATGGGTTAGAGCAACAAACAATAGAATCCCTAAATCTATTAAAAATGAGGAATACGGAATTCATTGTTGCCTTGAATAAGGTTGACAGGCTTTATGGGTGGAAAACATGTCGGAATGCTCCAATTGTTAAAGCATTGAAGCAGCAGACTAAGGATGTTCAAAATGAGTTTAATATGAGGCTCACTCAGATTATTACTGAATTCAAAGTACAAGGGCTGAATACCGAGTTGTATTATAAAAACAAAGAAATGGGAGAAACGTTCAGCATTGTGCCTACAAGTGCAATAAGCGGTGAAGGAATTCCCGATTTGTTATTACTATTGATTCAATGGACCCAAAAAACAATGGTTGAGAAACTTACATACAGTGAAGAAGTGCAGTGCACTGTTTTAGAGGTGAAGGTAGTTGAAGGCCATGGAACTACTATTGATGTTGTTTTAGTTAATGGTGTTCTTCATGAAGGAGAACAAATAGTTGTCTGCGGAATGCAGGGTCCTATAGTTACCACAATTCGAGCTTTATTGACACCTCATCCGATGAAGGAACTTCGTGTCAAGGGAACATATCTTCATCACAAAGAAATCAAAGCTGCAATGGGTATAAAAATCACTGCTCAGGGCCTTGAACATGCCATCGCTGGCACTGGTTTATATGTGGTGAAGCCTGATGATGATTTGGAAGATGTTAAAGAATCAGCCATGGAAGATATGCGGTCAGTAATGAGCAGGATTGACAGGACTGGGGAGGGTGTTTGTGTACAGGCATCTACCCTTGGCTCCTTGGaagcattactggagtttttgaaaactccagaagtgagtatcccagttagtggtataagcataggccctgtacataagaaggatgtaatgaaggccagtgtaatgcttgaaaaaaaacgagagtatgcagctatattggcatttgatgtcaaagttactcctgaggccagggaactggcagatgaattgggtgtcaagatatttattgctgatatcatttatcatctgtttgaccaatttaaagcttatattgacaacattaaggaggagaaaaagagagaagctgctgatgaggcagtcttcccatgtgttatgagtatcttaccaaattgcattttcaacaagaaggaCCCAATTGTTTTGGGAGTTGATATCCTTGAAGGCATTTTAAAGATTGGGACTCCAATTTGCATTCCTTCTAGAGAGTTCATTGATATTGGTCGCATTGCCTCCATTGAGAATAACCACAAACCTGTTGATTATGCAAAGAAGGGGCAGAAAGTAGCCATTAAGATTGTTGGCAGCAATTCTGAAGAGCAACAAAAAATGTTCGGGAGGCACTTTGAGATTGATGATGAACTTGTAAGCCATATTTCACGGAGATCTATCGATATACTCAAAGCTAATTATCGGGATGAACTAAATATGGAGGAATGGAGGTTGGTTGTGAAATTGAAGAATCTTTTCAAGATACAATGA 4068 0.3722 MGKKKPTARDEENAVQQGGGGKSKKKAVLIDDDEYSIGTELSEEPAPASEEKPVVAGKKKGKKGNAKAKSNDDDVDEDEDDPEIVFAGKKKGKNKKGGGSSAFTASGFDLLGDERDDDEEKSGLTGEVDGEEEDEPVVSFTGKKKASKKEGGSLFSASAFDAIDDGEEEDGPVISFKGKKKSSKGSKKGGGSLFSASAFDAIDDDADGEVVDDKNDDVDDDEPVIAFTGKKKSSKGGKKGGSVFSAAVLGEIDDGEENKDDGGGDDDDDDIGPITFSGKKKKSSQKAANSVSKGASVEEGDDKDEDDVSLVAFSGKKKSSKKKGSSTAAKGSDENMDAVDPEAPSVGSTDAGNSNVNKSEEVAGNSKNKKKNKKKSGRTAQEEEDLDKLLAELGETPPVPKPSTPPQDDKVQPTPEVVLVADASGEKEGEEETVDTAAAKKKKKKKEKEKEKKAAAAAAAAAAAVAGTVPENETAEDKAEVIEPKKNDSKAKKAADKKVPKHVREMQEALARRQEAEERKKREEEERLRKEEEERRRQEELERQAEEARRRKKEREKEKLQKKKQEGKLLTGKQKEEARRLEAMRKQILNNTGGMTLPGGDSGAPAKKPIYQTKKVKPNNRNQNGAAAAQIAESVEAKETATDVASEEPEKIEEVESVQVDDKVELPVAVEEDGEEDDDEDEWDAKSWDDVNLNTKGAFADEEADSEPKPIVKKEIKNAVPAQNAGATKPVAEEIENGKQINPHLNREPRKSVVPPKPSDENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADAKLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEQQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKALKQQTKDVQNEFNMRLTQIITEFKVQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLIQWTQKTMVEKLTYSEEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGEQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAMGIKITAQGLEHAIAGTGLYVVKPDDDLEDVKESAMEDMRSVMSRIDRTGEGVCVQASTLGSLEALLEFLKTPEVSIPVSGISIGPVHKKDVMKASVMLEKKREYAAILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNIKEEKKREAADEAVFPCVMSILPNCIFNKKDPIVLGVDILEGILKIGTPICIPSREFIDIGRIASIENNHKPVDYAKKGQKVAIKIVGSNSEEQQKMFGRHFEIDDELVSHISRRSIDILKANYRDELNMEEWRLVVKLKNLFKIQ 1355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01561 1355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 763 1054 IPR027417 -
Gma20g01561 1355 CDD IF2_eIF5B 766 976 - -
Gma20g01561 1355 Coils Coil 499 570 - -
Gma20g01561 1355 MobiDBLite consensus disorder prediction 423 442 - -
Gma20g01561 1355 Pfam Translation-initiation factor 2 1091 1204 IPR023115 -
Gma20g01561 1355 Gene3D - 757 985 IPR027417 -
Gma20g01561 1355 MobiDBLite consensus disorder prediction 136 150 - -
Gma20g01561 1355 Gene3D Translation factors 1218 1355 - -
Gma20g01561 1355 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1 1355 IPR015760 -
Gma20g01561 1355 MobiDBLite consensus disorder prediction 721 759 - -
Gma20g01561 1355 MobiDBLite consensus disorder prediction 668 686 - -
Gma20g01561 1355 MobiDBLite consensus disorder prediction 740 757 - -
Gma20g01561 1355 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 763 979 IPR000795 GO:0003924|GO:0005525
Gma20g01561 1355 TIGRFAM small_GTP: small GTP-binding protein domain 768 893 IPR005225 GO:0005525
Gma20g01561 1355 MobiDBLite consensus disorder prediction 204 220 - -
Gma20g01561 1355 Coils Coil 427 459 - -
Gma20g01561 1355 MobiDBLite consensus disorder prediction 473 584 - -
Gma20g01561 1355 MobiDBLite consensus disorder prediction 254 271 - -
Gma20g01561 1355 MobiDBLite consensus disorder prediction 376 391 - -
Gma20g01561 1355 MobiDBLite consensus disorder prediction 278 292 - -
Gma20g01561 1355 SUPERFAMILY Translation proteins 1222 1354 IPR009000 -
Gma20g01561 1355 Gene3D Translation factors 986 1106 - -
Gma20g01561 1355 MobiDBLite consensus disorder prediction 347 362 - -
Gma20g01561 1355 Gene3D - 1107 1211 IPR036925 -
Gma20g01561 1355 Pfam Elongation factor Tu GTP binding domain 767 975 IPR000795 GO:0003924|GO:0005525
Gma20g01561 1355 CDD aeIF5B_II 987 1097 - -
Gma20g01561 1355 CDD IF2_aeIF5B_IV 1226 1321 - -
Gma20g01561 1355 MobiDBLite consensus disorder prediction 204 686 - -
Gma20g01561 1355 Pfam Elongation factor Tu domain 2 1002 1077 IPR004161 GO:0005525
Gma20g01561 1355 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1088 1217 IPR036925 -
Gma20g01561 1355 PRINTS GTP-binding elongation factor signature 767 780 IPR000795 GO:0003924|GO:0005525
Gma20g01561 1355 PRINTS GTP-binding elongation factor signature 831 841 IPR000795 GO:0003924|GO:0005525
Gma20g01561 1355 PRINTS GTP-binding elongation factor signature 847 858 IPR000795 GO:0003924|GO:0005525
Gma20g01561 1355 PRINTS GTP-binding elongation factor signature 883 892 IPR000795 GO:0003924|GO:0005525
Gma20g01561 1355 MobiDBLite consensus disorder prediction 1 191 - -
Gma20g01561 1355 MobiDBLite consensus disorder prediction 640 667 - -
Gma20g01561 1355 MobiDBLite consensus disorder prediction 615 629 - -
Gma20g01561 1355 PANTHER PHOTOSYSTEM II PROTEIN D1 1 1355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01561 Gma-Chr20 42640228 42649338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01561 220 1355 Eukaryotic Initiation Factors Gene Family AT1G76810 65.013 0.0 1211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01561 K03243 - gmx:100814875 2119.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02154 10 49054110 49063241 Gma20g01561 20 42640228 42649338 GST