Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01557 ATGGATTTGGTGGAAGGCGTTGGAGAGAGTTCCTCGCCGCCGCGCGCCTTCAGCGGCTGCAGCAACTACGACGTCCATAACAACGTCTACAACCGCCTCGTTGAAACCGGCCACGACCAAGCCGTTTCCAACCCCAACTTCCGCGAACACTTGGAGGCTCACTTCAATCGCTTGCCACCGAGTTATGGACTGGATGTGAATATCGATAGAGCTGAAGATGTTCTGTTGCATCAAACCCTTCTTGCTTTGGCTAAGGACCCTCACAAGCGCCCTGTATACCATATACGCTTCCTCGAGAATATTTCAACTAGAACAGATGGTGAAGATGAACAAATTTTAAGTACTCATTATAGCCCTGGATCAACTTCTCATGCAACAAATGGGGGAGCTGTATCACCTGGTAAAAGTAAGATGAGGGATATTGCAAATGAGTTTGAGCCTTGCTCGAAGCTCGAGGACCTAAATTTGGATGTCAGAAAGAACTCAAAGGTGACAGAGGAAAAATTTCTCACTGACAATTTTTTCCAGAGGCACGAACATTCAAGTGTCCCTGTTCATGAAATAATATTTTCCACTGTTGACAAGCCAAAGCTCTTAAGCCAGCTGTCCGCTTTGCTGTCTGATATTGGACTTAACATACGTGAAGCTCATGTTTTCTCCACAACTGATGGCTATTCCCTTGACGTGTTTGTGGTAGATGGATGGCCAGTAGAGGGGTCATGGTCTCGTTCTTCAAATTCTCATTCAGCTGTGGAGAAAGCCTTAGCAACTGAAGGAAAATCAGGAGATTGGGAAATAGATAGGAGGTTGCTAAAGTTAGGAGAAAAAATAGCATCTGGATCCTCTGGAGATTTGTATCGTGGAGTTTATCTTGGTGAAGATGTTGCTGTTAAGGTTCTGAGATCAGAGCAATTGAATGATGCTTTAGAGGATGAGTTTGCTCAAGAAGTGGCCATTCTGAGGTCAGTGCATCATAAAAATGTTGTTCGTTTCATTGGTGCATGTACAAAGTGTCCACATTTGTGCATAATAACAGAGTATATGCCTGGAGGAAGTCTGTATGATTACATGCATAGAAATCATAATGTCTTGGAGCTGTCTCAATTACTAAATTTTGCAATTGATGTCTGCAAGGGTATGAAGTATTTGCATCAAAACAACATAATTCACAGAGATCTGAAGACGGCTAATTTGCTGATGGATACGCACAATGTTGTTAAAGTCGCAGATTTTGGAGTTGCTCGATTCCTAAATCAGGGGGgagtgatgacagcagaaactggaacatatagatggatggcaccagaggttataaaccatcagccttatgatcagaaagcagatgtattcagtttttccattgtactgtgggaattagtgacGGCAAAGGTACCATATGACACCATGACTCCACTACAAGCTGCCTTGGGTGTGAGACAGGGTCTGCGTCCAGAACTTCCGAAGGATGGGCACCCTAAACTATTAGAGTTGATGCAAAGATGTTGGGAAGCAATTCCAAGCCACCGTCCATCCTTTAATGAGATAACCATTGAACTTGAAAATCTTTTGCAAGAAATGGAGAAAGATTCAGAAGCGAATGGTGCTTGA 1608 0.4036 MDLVEGVGESSSPPRAFSGCSNYDVHNNVYNRLVETGHDQAVSNPNFREHLEAHFNRLPPSYGLDVNIDRAEDVLLHQTLLALAKDPHKRPVYHIRFLENISTRTDGEDEQILSTHYSPGSTSHATNGGAVSPGKSKMRDIANEFEPCSKLEDLNLDVRKNSKVTEEKFLTDNFFQRHEHSSVPVHEIIFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEGSWSRSSNSHSAVEKALATEGKSGDWEIDRRLLKLGEKIASGSSGDLYRGVYLGEDVAVKVLRSEQLNDALEDEFAQEVAILRSVHHKNVVRFIGACTKCPHLCIITEYMPGGSLYDYMHRNHNVLELSQLLNFAIDVCKGMKYLHQNNIIHRDLKTANLLMDTHNVVKVADFGVARFLNQGGVMTAETGTYRWMAPEVINHQPYDQKADVFSFSIVLWELVTAKVPYDTMTPLQAALGVRQGLRPELPKDGHPKLLELMQRCWEAIPSHRPSFNEITIELENLLQEMEKDSEANGA 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01557 535 ProSitePatterns Serine/Threonine protein kinases active-site signature. 388 400 IPR008271 GO:0004672|GO:0006468
Gma20g01557 535 Pfam Protein tyrosine and serine/threonine kinase 271 518 IPR001245 GO:0004672|GO:0006468
Gma20g01557 535 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 10 529 - -
Gma20g01557 535 Coils Coil 512 532 - -
Gma20g01557 535 MobiDBLite consensus disorder prediction 116 130 - -
Gma20g01557 535 MobiDBLite consensus disorder prediction 116 135 - -
Gma20g01557 535 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 10 529 - -
Gma20g01557 535 PRINTS Tyrosine kinase catalytic domain signature 490 512 IPR001245 GO:0004672|GO:0006468
Gma20g01557 535 PRINTS Tyrosine kinase catalytic domain signature 345 358 IPR001245 GO:0004672|GO:0006468
Gma20g01557 535 PRINTS Tyrosine kinase catalytic domain signature 382 400 IPR001245 GO:0004672|GO:0006468
Gma20g01557 535 PRINTS Tyrosine kinase catalytic domain signature 428 438 IPR001245 GO:0004672|GO:0006468
Gma20g01557 535 PRINTS Tyrosine kinase catalytic domain signature 447 469 IPR001245 GO:0004672|GO:0006468
Gma20g01557 535 ProSiteProfiles ACT domain profile. 187 269 IPR002912 -
Gma20g01557 535 SMART serkin_6 271 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01557 535 CDD STKc_MAP3K-like 277 519 - -
Gma20g01557 535 SUPERFAMILY ACT-like 186 262 IPR045865 -
Gma20g01557 535 Gene3D Transferase(Phosphotransferase) domain 1 349 534 - -
Gma20g01557 535 SUPERFAMILY Protein kinase-like (PK-like) 258 524 IPR011009 -
Gma20g01557 535 Gene3D Phosphorylase Kinase; domain 1 260 348 - -
Gma20g01557 535 ProSiteProfiles Protein kinase domain profile. 271 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01557 Gma-Chr20 42601566 42610747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01557 24 529 MAP Kinase Kinase Kinase AT4G35780 46.765 4.68e-169 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gma20g01557 PK_Tyr_Ser-Thr 8.8e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01557 - - gmx:100797987 1075.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02159 10 49100117 49110331 Gma20g01557 20 42601566 42610747 GST