Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01556 ATGACGGACGGCTTCTGGAATCGGCAGCAGCAGCAGCCGCTTCAACCTTCTTCCGCCATGCTCAAACGACCTCGTACTGAATATGATATGTCACCTTCTGGTCTGACAGGGGGTAATGAGATGCATAATTATATTGCTCGAAATGATGACCATACCGGTCATCGAATGCTAAAGGACACTAAAACACTTGGATCTGCTTATGACCGCTACCTTCAAAGTGCAGGGCTTACTTCGTTTAATTCTGGGGAAGCCAGTGCAATTGGTGGTGTTGGATTGGGAAGGGGTGTTGGTGGATTACCACGCCATTCACTAACTGATCCTGCTGTCATGGGGCATCCTGGTGGTGGTCATGATCTTGCACGAAATGGACGGAATGTCAATTATGGCGGTCAGTTAACAGTAGATGCAGCTTCCATGCCTGGACCTGAGACTGTACCTCTTCCCCCAGATGCTTCAAGTACTTTATATGTTGAAGGTCTCCCATCTGACAGCACAAGAAGGGAAGTGGCTCATATTTTTCGCCCTTTTGTTGGATATAGAGAAGTAAGGCTTGTGAGCAAAGAATCCAAACATCGTGGTGGAGATCCTCTAATCCTTTGTTTTGTGGATTTTGCAAATCCGGCCTGTGCAGCAACTGCTCTGAGTGCATTGCAAGGTTATAAAGTTGATGAACTCAATCCTGAGTCTAGTCACTTGCGGCTTCAGTTCTCTCGGTTTCCTGGTCCCAGATCTGGACCTGGACCTCGTGGCAAGAGGTGA 759 0.4783 MTDGFWNRQQQQPLQPSSAMLKRPRTEYDMSPSGLTGGNEMHNYIARNDDHTGHRMLKDTKTLGSAYDRYLQSAGLTSFNSGEASAIGGVGLGRGVGGLPRHSLTDPAVMGHPGGGHDLARNGRNVNYGGQLTVDAASMPGPETVPLPPDASSTLYVEGLPSDSTRREVAHIFRPFVGYREVRLVSKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDELNPESSHLRLQFSRFPGPRSGPGPRGKR 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01556 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 239 IPR000504 GO:0003723
Gma20g01556 252 MobiDBLite consensus disorder prediction 1 19 - -
Gma20g01556 252 Gene3D - 149 239 IPR012677 -
Gma20g01556 252 PANTHER RNA-BINDING PROTEIN 2 7 252 - -
Gma20g01556 252 CDD RRM_RBPMS_like 153 235 - -
Gma20g01556 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 223 IPR000504 GO:0003723
Gma20g01556 252 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 7 252 - -
Gma20g01556 252 SUPERFAMILY RNA-binding domain, RBD 131 247 IPR035979 GO:0003676
Gma20g01556 252 SMART rrm1_1 154 228 IPR000504 GO:0003723
Gma20g01556 252 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01556 Gma-Chr20 42567633 42572948 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01556 - - gmx:100813445 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02160 10 49138114 49143855 Gma20g01556 20 42567633 42572948 GST
Gma16g01507 16 34664332 34671787 Gma20g01556 20 42567633 42572948 PCT
Gma02g00754 02 7342137 7346017 Gma20g01556 20 42567633 42572948 PCT
Gma20g01556 20 42567633 42572948 Gma16g01507 16 34664332 34671787 PCT
Gma20g01556 20 42567633 42572948 Gma02g00754 02 7342137 7346017 PCT