Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01553 ATGGCAGATCTTGTTAGCTACAGGAATGCCGACCGTGACATCGACCAAcaggcattgattgctttgaaaaagggtgctcaactacttaaatatggtcgtaagggaaaacctaagttttgtccgtttagactttccaatgatgaatcatctttaatctggatatcaagtagtggagaaagaaatctgaagctatcttcagtctcaagaattattcctggacaaagaactGCTGTTTTCCAACGATATCTGCGTCCTGAGAAGGACTATCTATCTTTTTCACTTATTTATAACAACGGGAAGCGATCCCTTGATTTGATTTGCAAGGATAAAGTTGAGGTAGAAGTGTGGATTGCTGGTCTTAAGGCGCTGATATCTTCCGGTCAAGGTGGGCGTTCCAAAATTGATGGATGGAGTGATGGAGGCCTACATCTTGATGACAGTAGAGACTTGACATCAAATAGTCCTAGTGAAAGTTCAGTTAGTGCTTCACGAGACCTCAGTTCTCCAGACGTTTATGTTAGTCTGGCAAATACTTCTCCACATTCCTTTCACTCTGAGAATACTTTAAATTTTGAAAGGTCACATGCACCATCAAACCCATCAAATATGCAAGTGAAAGGATCTAGTTCAGATGTTTTTCGTGTTAGTGTCTCAAGTGCACCCAGCACATCCAGTCATGGATCTGCACCTGATGATTATGATGCTCTTGGGGATGTATACATATGGGGGGAGGTTATCTGTGAGAATGTTGTGAAAGTTGGTGCTGAGAAAAGTGCTAGTTATTTTAGCCCAAGGACAGATATTCTCCTCCCCAGGCCATTGGAGTCCAATGTGGTTTTAGATGTGCTTCAAATAGCATGTGGTGTTAAACATGCTGCTCTAGTCACAAGGCAAGGTGAACTTTTTACATGGGGTGAAGAATCTGGAGGACGCCTTGGCCATGGTGTTGGGAAGAATGTGGTTCAACCTCGTCTAGTTGAAGCAATGGCTTCTACAACTGTTGATTTTGTTGCCTGTGGGGAGTTCCATACCTGTGCTGTTACAATGGCTGGGGAACTATATACATGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGTCATGGCACTGATGTTAGTCATTGGATACCAAAGAGAATTGCAGGTCCACTAGAGGGGCTTCAAGTTGCTTTAGTCACTTGTGGTCCATGGCACACAGCCTTGATAACTTCAACTGGGCAGCTCTTCACATTTGGTGATGGAACATTTGGTGTCTTAGGCCATGGAGATAGGGAAAATGTTTCGTATCCTAGAGAAGTAGAATCTTTATCTGGGTTGAGGACAATAGCTGTTGCTTGTGGAGTGTGGCATACTGCAGCTATCATAGAGGTTATTGTGACACAATCAAGTGCTAGCGTATCATCAGGTAAATTGTTTACTTGGGGTGACGGAGATAAAAACCGCCTTGGACACGGAGACAAGGACGCCCGGCTTGAACCAACTTGTGTACCTTCACTTATTGAAGACAATTTTCATAGAATTGCTTGCGGGCACAGTTTGACAGTAGGCCTGACAACATCTGGACGTGTTTTTACAATGGGAAGCACTGTTTATGGTCAGCTTGGGAATCCCCAGTCCGATGGAAAACTGCCGTGTTTGGTTGAAGACAAGTTTGCAGGAGAATCTGTTGAAGAAATTGCATGTGGAGCTTATCATGTTGCTGTTTTAACATCCAAAAATGAAGTTTTCACTTGGGGAAAGGGTGCAAATGGGAGATTGGGTCATGGAGATGTTGAAGATCGAAAATCACCTACTTTAGTTGAAGCCTTGAAAGATAGACATGTGAAATATATTGCATGTGGTTCAAACTACTCTTCTGCCATATGCCTTCATAAGTGGGTATCTGGTGCTGAGCAGTCTCAGTGCTCTGCTTGTAGACAGGCATTTGGGTTCACTAGAAAGAGGCACAACTGTTATAATTGTGGACTTGTGCACTGCCATTCATGTAGTTCTAGGAAAGCATTAAGAGCTGCCCTGGCTCCTAATCCTGGGAAGCCATATCGTGTTTGTGATTCTTGTTTTGTAAAATTGAACAAGGTTGCAGAATTGGGCAACAATAATCGGAGGAATGCTATGCCTCGTTTGTCAGGTGAAAACAAGGACAGATTAGAGAAGCCTGAGCTAAGATTGACCAAGACAGCAGTCCCTTCTAATATGGATTTGATAAAGCAACTTGATAGTAAGGCAGCTAAACAGGGGAAGAAGGCTGATACATTCTCTCTGGTTCGCACCTCTCAACCACAGTCTTTGCTACAGCTCAAAGATGTTGTCTTGTCTACTGCTATCGATTTGAAGCGAACAGCTCCAAGACCTGTTCTGACATCATCTGGAGTGAGTTCCAGGTCTGTGTCCCCTTTCTCTAGAAGACCAAGCCCCCCTCGTTCAGCTACACCTATTCCAACAACATCGGGACTTTCCTTCTCTAAAAGTATTACTGATAGTTTGAAGAAAACAAATGAACTTTTGAATCAGGAAGTGTTGAAGTTACGCGGTCAGGTTGAGACCCTGAGACAGAGATGCGAACTGCAAGAATTGGAGCTTCAAAGGTCAACAAAAAAAGCTCAGGAAGCTATGGCAGTGGCTGCAGAGGAATCCGCGAAATCTAAGGCTGCAAAAGAAGTTATAAAGTCACTTACAGCACAGCTCAAAAATCTGTCTGAGAGGCTTCCTCCCGGTGCTTATGATGCTGAAAACATCAGACCAGCTTACCTGCCAAATGGTTTGGAGCCAAATGGCATCCGCTATCCAGACTTAAATGGTGAACACCACACCAGGGCAGAGTCAATCAGTGGCTCTAGTTTGGCTTCCATAGGACTTGAATCATCCCTGATGAATAGAACCGATGGCACTTTGCCTGGAAGCTATGGAGCTAATCATTACCAGCAAAACCGGGGATCTGTGACCTCTAATGGGACAGATGATTACCCGAACGTTAAATTGCCAAATGGCAGCGGCATGATTCAGCCAAGCAGCAGTACTGTGTCAGATACGGTTGATGGTGGTAGGGATTCTGGAGATTTCCAAGATGATGAGAGTGGTTTGAGATCAAGGAACGCCATAGTGCCTGCTAATAGTAATCAAGTTGAGGCAGAATGGATTGAACAATATGAACCTGGTGTCTACATTACACTGGTTGCCTTGCGTGATGGAACAAGAGATCTGAAGCGAGTGCGGTTCAGCCGGCGAAGATTTGGAGAGCACCAAGCAGAGACTTGGTGGTCGGAGAACCGTGATAGGGTATACAAAAGGTACAATGTTTGA 3300 0.4212 MADLVSYRNADRDIDQQALIALKKGAQLLKYGRKGKPKFCPFRLSNDESSLIWISSSGERNLKLSSVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEVEVWIAGLKALISSGQGGRSKIDGWSDGGLHLDDSRDLTSNSPSESSVSASRDLSSPDVYVSLANTSPHSFHSENTLNFERSHAPSNPSNMQVKGSSSDVFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICENVVKVGAEKSASYFSPRTDILLPRPLESNVVLDVLQIACGVKHAALVTRQGELFTWGEESGGRLGHGVGKNVVQPRLVEAMASTTVDFVACGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLQVALVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTIAVACGVWHTAAIIEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKDARLEPTCVPSLIEDNFHRIACGHSLTVGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVEDKFAGESVEEIACGAYHVAVLTSKNEVFTWGKGANGRLGHGDVEDRKSPTLVEALKDRHVKYIACGSNYSSAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCFVKLNKVAELGNNNRRNAMPRLSGENKDRLEKPELRLTKTAVPSNMDLIKQLDSKAAKQGKKADTFSLVRTSQPQSLLQLKDVVLSTAIDLKRTAPRPVLTSSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSITDSLKKTNELLNQEVLKLRGQVETLRQRCELQELELQRSTKKAQEAMAVAAEESAKSKAAKEVIKSLTAQLKNLSERLPPGAYDAENIRPAYLPNGLEPNGIRYPDLNGEHHTRAESISGSSLASIGLESSLMNRTDGTLPGSYGANHYQQNRGSVTSNGTDDYPNVKLPNGSGMIQPSSSTVSDTVDGGRDSGDFQDDESGLRSRNAIVPANSNQVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENRDRVYKRYNV 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01553 1099 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 573 624 IPR000408 -
Gma20g01553 1099 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 469 520 IPR000408 -
Gma20g01553 1099 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 444 454 IPR000408 -
Gma20g01553 1099 Pfam Transcription factor BRX N-terminal domain 876 911 IPR027988 -
Gma20g01553 1099 SMART fyve_4 623 692 IPR000306 GO:0046872
Gma20g01553 1099 MobiDBLite consensus disorder prediction 147 165 - -
Gma20g01553 1099 Pfam Transcription factor regulating root and shoot growth via Pin3 1042 1097 IPR013591 -
Gma20g01553 1099 SUPERFAMILY FYVE/PHD zinc finger 625 697 IPR011011 -
Gma20g01553 1099 MobiDBLite consensus disorder prediction 145 165 - -
Gma20g01553 1099 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 392 402 IPR000408 -
Gma20g01553 1099 MobiDBLite consensus disorder prediction 994 1012 - -
Gma20g01553 1099 MobiDBLite consensus disorder prediction 785 803 - -
Gma20g01553 1099 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 285 295 IPR000408 -
Gma20g01553 1099 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 1096 - -
Gma20g01553 1099 Pfam Pleckstrin homology domain 15 124 IPR001849 -
Gma20g01553 1099 MobiDBLite consensus disorder prediction 994 1026 - -
Gma20g01553 1099 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 299 350 IPR000408 -
Gma20g01553 1099 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 351 405 IPR000408 -
Gma20g01553 1099 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 406 457 IPR000408 -
Gma20g01553 1099 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 631 700 IPR013083 -
Gma20g01553 1099 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 521 572 IPR000408 -
Gma20g01553 1099 Coils Coil 832 866 - -
Gma20g01553 1099 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 237 298 IPR000408 -
Gma20g01553 1099 ProSiteProfiles BRX domain profile. 1043 1098 IPR013591 -
Gma20g01553 1099 PRINTS Chromosome condensation regulator RCC1 signature 568 589 IPR000408 -
Gma20g01553 1099 PRINTS Chromosome condensation regulator RCC1 signature 392 408 IPR000408 -
Gma20g01553 1099 PRINTS Chromosome condensation regulator RCC1 signature 301 317 IPR000408 -
Gma20g01553 1099 PRINTS Chromosome condensation regulator RCC1 signature 408 422 IPR000408 -
Gma20g01553 1099 PRINTS Chromosome condensation regulator RCC1 signature 282 295 IPR000408 -
Gma20g01553 1099 PRINTS Chromosome condensation regulator RCC1 signature 351 367 IPR000408 -
Gma20g01553 1099 PRINTS Chromosome condensation regulator RCC1 signature 510 528 IPR000408 -
Gma20g01553 1099 Pfam FYVE zinc finger 625 691 IPR000306 GO:0046872
Gma20g01553 1099 CDD FYVE_like_SF 634 687 - -
Gma20g01553 1099 Gene3D - 14 130 IPR011993 -
Gma20g01553 1099 SUPERFAMILY RCC1/BLIP-II 236 626 IPR009091 -
Gma20g01553 1099 CDD PH_PLC_plant-like 17 125 - -
Gma20g01553 1099 MobiDBLite consensus disorder prediction 701 720 - -
Gma20g01553 1099 MobiDBLite consensus disorder prediction 784 818 - -
Gma20g01553 1099 Gene3D - 462 630 IPR009091 -
Gma20g01553 1099 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 16 1096 - -
Gma20g01553 1099 MobiDBLite consensus disorder prediction 967 986 - -
Gma20g01553 1099 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 629 691 IPR017455 -
Gma20g01553 1099 Coils Coil 881 901 - -
Gma20g01553 1099 Pfam Regulator of chromosome condensation (RCC1) repeat 520 569 IPR000408 -
Gma20g01553 1099 Pfam Regulator of chromosome condensation (RCC1) repeat 406 454 IPR000408 -
Gma20g01553 1099 Pfam Regulator of chromosome condensation (RCC1) repeat 351 402 IPR000408 -
Gma20g01553 1099 Pfam Regulator of chromosome condensation (RCC1) repeat 574 621 IPR000408 -
Gma20g01553 1099 Pfam Regulator of chromosome condensation (RCC1) repeat 468 515 IPR000408 -
Gma20g01553 1099 Pfam Regulator of chromosome condensation (RCC1) repeat 299 347 IPR000408 -
Gma20g01553 1099 SUPERFAMILY PH domain-like 15 124 - -
Gma20g01553 1099 Gene3D - 182 461 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01553 Gma-Chr20 42540092 42547780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01553 1044 1099 Major Intrinsic Protein MIP AT1G31880 53.571 2.08e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01553 - - gmx:100811999 2105.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02161 10 49162099 49172287 Gma20g01553 20 42540092 42547780 GST
Gma16g01508 16 34691945 34702635 Gma20g01553 20 42540092 42547780 PCT
Gma02g00756 02 7368903 7377240 Gma20g01553 20 42540092 42547780 PCT
Gma20g01553 20 42540092 42547780 Gma16g01508 16 34691945 34702635 PCT
Gma20g01553 20 42540092 42547780 Gma02g00756 02 7368903 7377240 PCT