Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01549 ATGGGGTTCAATCGAGATAGGCTTGTTGGGGAGGGTGCATCTGCCAAGGTTTATAAAGGGTTTCTTCCTTTTCGAGGGGATGTGGCTGTGAAGAGATTTGAAAGAGAGAATGATTTGGATTGTTTGCACAACCCTTTTGCTACTGAATTTGCCACCATAGTGAGTTACTTGCGGAACAAGAATTTGGTTCAGCTTAAGGGGTGGTGCTGTGAGGGGAATGAGTTGGTTCTGGTTTATGAGTTTCTTCCCAATGGGAGCCTCAATAAGGTTTTGCATAGAAACTTCAATTCTTCCATTGTTCTTTCGTGGCAGCAAAGGGTGAACATTGTTCTCGGGGTTGCTTCAGCTCTTACCTACCTTCATGAGGAGTGTGAGAGGCAGATCATTCATAGGGATGTGAAGACATGA 408 0.4461 MGFNRDRLVGEGASAKVYKGFLPFRGDVAVKRFERENDLDCLHNPFATEFATIVSYLRNKNLVQLKGWCCEGNELVLVYEFLPNGSLNKVLHRNFNSSIVLSWQQRVNIVLGVASALTYLHEECERQIIHRDVKT 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01549 135 Gene3D Phosphorylase Kinase; domain 1 1 81 - -
Gma20g01549 135 SUPERFAMILY Protein kinase-like (PK-like) 3 134 IPR011009 -
Gma20g01549 135 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.1 2 135 - -
Gma20g01549 135 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Gma20g01549 135 Pfam Protein kinase domain 4 135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01549 135 ProSiteProfiles Protein kinase domain profile. 3 135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01549 135 Gene3D Transferase(Phosphotransferase) domain 1 82 135 - -
Gma20g01549 135 PANTHER - 2 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01549 Gma-Chr20 42523809 42524216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01549 2 135 Receptor kinase-like Gene Family AT5G42120 65.468 6.26e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gma20g01549 Pkinase 8.8e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01549 - - gsj:114402134 275.018