Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01537 ATGGAGCAGAAACACGTGTTGTTTTCAGCATTGAGTGTTGGGGTTGGGCTGGGTGTGGGACTTGGATTGAGCACAGGACAAGCTGTTCAAAAATGGGTTGTCGGGAGTTGTGAGTCTGATGAGATTTCTGGGGAGCAAATTGTGTTGGAGCTCAACAACAGAGTCATTGATGGGAAGAACAGCAAAGTCACATTTGATGACTTTCCATATTACTTAAGTGAAAGAATCCGATTTGTGTTAACAAGTACTGGATATGTTTATTTAAAACAAGACTTTTCCAAGCACTTGAGGAACCTTCGTCCAGCAAGCAGAGCTATTTTGCTTTCTGGACCTGCAGAACCTTATCAGCAAAATCTTGCCCGAGCTTTAGCACATTACTTTGAATCGAAGTTACTGTTGCTAGACATTACTGACTTCTCGTTGGAGATGCAGAGGAAATATGGATGTCCCAGAAAAGAACCAagttttcaaaggtccatatctgaggtgacattggagcgagtgtctggtctgtttggttccttgtcagtccttccttcaacaggcagaactagaggtacactacatcgtcagagtagtggaattgaaaattccagcaatcctccaaagctccgtaggaatgcctctactgcatgtgatacaattagcactccccaatatggtccttcagatccagCTCCTTTGAAGTGCACAAGCGGCTTCTGTTTTGATGAAAAGCTCTTCGTGCAGTCACTTTATAAGGTCTTGGTTTCTCTCTCAGAAACCAGTTCTGTTATTTTATATATCAAGGATGTTGAGAAGCTCTTTGTTCGATCAACAAGGCTACACAATTTGTTCCAAAAGTTAATTAAGAAACTTTCAGGATCAGTGTTAATACTCGGTTCCCAGATCTTTGATTCTGAAGATGATTGTGCAGAAATTGATGAAAAGCTTACTATGTTATTCCCTTACAACATTGACATCAAACCACCTCAAGATGAGACCCATCTTGCAAGCTGGAGAACCAAACTGAAAAAAGACATGGAAACTAGTCTGTTTCAAGATAGCAGGAACCATATTGCTGAAGTACTTGCAGCAAATGACGTTGATTGTGATGACTTGGAAAAAGTAAGCAATGCTGACACTATGCTACTCAGTAATTGCATTGAAGAGATTGTGGCGTCTGCAATTTCTCACCACCTGATGGAGACTAAACATCCAGAATACCGAAATAGAAAACTAGTTATATCACACAAGAGtttgtcCCATGTATTGAATCTTTTCCAGGAAAGTGAAAGTAATCCGGAGAATAAAGATTCAAACAAGGAGGATGCTCTTGCAACAAagaaagatggtgacaatgagtttgagaagcatatgagagaagaggttgtgcctgcaaatGAGATAGGGGTTACATTTGAAGATATTGGTGCATTGGATGATATTAAAGAATTACTTCAAGATGTGGTCATGCTTCCCCTCAGAAGACCAGACTTATTCAAAGGTGGACTTCTGAAGCCTTATAAAGGAATATTGCTTTtcgggcctcctggtacaggaaaaacaatgcttgcaaaggcaattgcAAATGAAGCTGGAGCAAGCTTCATCAATGTCTCAATCTCTAAAATCACTTCAAAATGGTTTGGAGAAGATGAAAAGAATGTCCGAGCTCTGTTTTCATTAGCAGCAAAAGTTGCTCCAACTATTATTTTTATTGATGAAGTTGATAGCATGCTTGGGAAGCGGACTAAATATGGGGAACATGAGGCAATGAGAAAGATTAAAAATGAATTCATGGCCCACTGGGATGGGCTATTGACAGAACCCAATGAACGAATTCTGGTTCTTGCCGCAACCAACAGGCCATTTGACCTTGATGAAGCAATCATAAGACGGTTTGAGCGCAGCAGGATCATGGTTGGTCTTCCATCTGCTGAGAACAGGGAAATGATCTTGAAAACTATCCTAGCTAAGGAAAAATATGAAAATATAGACTTTAAAGAGCTTTCAACCATGACAGAAGGATATACTGGAAGTGATCTTAAGAATTTGTGCACAGCTGCTGCTTATAGACCTGTTAGAGAGGTACTTCAACAGGACAGGTTGAAGGAAAAGaagaaaacggaggcagaagttcaaagctcacaaaatgcttctgatgcaaaaggtgataaagatgaccaagtgatgactttgaggcctttaaacatggaagacatgagactggcaaagagtcaggtggctgcaagttttgctgcagaaggatcaataatgagtgagctgaaggagtggaatgaattgtttggagaaggagATGACAAGCCCATTAGAGAGTCTCTACTGAAAACCTACAGATACCCAATTGCGTGCAGAGAGCTAAGCTTTATTCTGAGGGAAGCTTTTCATCAATTTCCCAAAAACTTGCAATCCATCGTCTTCCAAGACACCCTCTCCGCCTTCCGTCTTCTCCCTCAAATACAGACTCAGAGTGCTGTTTCTGCAGTCCACTCCCTCCTTCAGAGTGTAGAAGCAGCACTACCAAAGCAAAAAAAGAATGTGGCTGTAACAAAATTTAAGCATGCAATGGTTGTTCATAAGAGGCGCTTAGTTTCTTGTTCCTGTATTGCAGGTTCATTGCAATTGCCACAAGATATTCTTGCGCACATTTTCAGTTTTCTTGAAATGAAATCTTTAGTCTCAATGGGGCTAGTCTGCTGGTCATGGAATATAGCTGCAAATGATAACCATCTGTGGGAGAAGCAGTATGTTGCACTGTACGGCAATCGTGCTAAACCAAAGCCTGCGAAACTGATTGAAGGCAAGAACGATGGGCTTTTGCTGGAACCCGTAGATACTAGAATCATTACTGACTGGAAAGAATCTGTTAAAGGAGCATACACTTGA 2889 0.3319 MEQKHVLFSALSVGVGLGVGLGLSTGQAVQKWVVGSCESDEISGEQIVLELNNRVIDGKNSKVTFDDFPYYLSERIRFVLTSTGYVYLKQDFSKHLRNLRPASRAILLSGPAEPYQQNLARALAHYFESKLLLLDITDFSLEMQRKYGCPRKEPSFQRSISEVTLERVSGLFGSLSVLPSTGRTRGTLHRQSSGIENSSNPPKLRRNASTACDTISTPQYGPSDPAPLKCTSGFCFDEKLFVQSLYKVLVSLSETSSVILYIKDVEKLFVRSTRLHNLFQKLIKKLSGSVLILGSQIFDSEDDCAEIDEKLTMLFPYNIDIKPPQDETHLASWRTKLKKDMETSLFQDSRNHIAEVLAANDVDCDDLEKVSNADTMLLSNCIEEIVASAISHHLMETKHPEYRNRKLVISHKSLSHVLNLFQESESNPENKDSNKEDALATKKDGDNEFEKHMREEVVPANEIGVTFEDIGALDDIKELLQDVVMLPLRRPDLFKGGLLKPYKGILLFGPPGTGKTMLAKAIANEAGASFINVSISKITSKWFGEDEKNVRALFSLAAKVAPTIIFIDEVDSMLGKRTKYGEHEAMRKIKNEFMAHWDGLLTEPNERILVLAATNRPFDLDEAIIRRFERSRIMVGLPSAENREMILKTILAKEKYENIDFKELSTMTEGYTGSDLKNLCTAAAYRPVREVLQQDRLKEKKKTEAEVQSSQNASDAKGDKDDQVMTLRPLNMEDMRLAKSQVAASFAAEGSIMSELKEWNELFGEGDDKPIRESLLKTYRYPIACRELSFILREAFHQFPKNLQSIVFQDTLSAFRLLPQIQTQSAVSAVHSLLQSVEAALPKQKKNVAVTKFKHAMVVHKRRLVSCSCIAGSLQLPQDILAHIFSFLEMKSLVSMGLVCWSWNIAANDNHLWEKQYVALYGNRAKPKPAKLIEGKNDGLLLEPVDTRIITDWKESVKGAYT 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01537 962 MobiDBLite consensus disorder prediction 422 443 - -
Gma20g01537 962 Pfam F-box-like 875 917 IPR001810 GO:0005515
Gma20g01537 962 MobiDBLite consensus disorder prediction 428 443 - -
Gma20g01537 962 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 442 767 - -
Gma20g01537 962 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 437 - -
Gma20g01537 962 Gene3D - 464 637 IPR027417 -
Gma20g01537 962 SMART fbox_2 876 916 IPR001810 GO:0005515
Gma20g01537 962 CDD AAA 499 637 - -
Gma20g01537 962 ProSitePatterns AAA-protein family signature. 608 627 IPR003960 GO:0005524|GO:0016887
Gma20g01537 962 SUPERFAMILY F-box domain 873 923 IPR036047 GO:0005515
Gma20g01537 962 Pfam AAA+ lid domain 658 696 IPR041569 -
Gma20g01537 962 Gene3D - 866 961 - -
Gma20g01537 962 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 437 - -
Gma20g01537 962 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 442 767 - -
Gma20g01537 962 SMART AAA_5 501 639 IPR003593 -
Gma20g01537 962 MobiDBLite consensus disorder prediction 697 723 - -
Gma20g01537 962 Pfam ATPase family associated with various cellular activities (AAA) 505 631 IPR003959 GO:0005524|GO:0016887
Gma20g01537 962 ProSiteProfiles F-box domain profile. 870 916 IPR001810 GO:0005515
Gma20g01537 962 MobiDBLite consensus disorder prediction 183 208 - -
Gma20g01537 962 Gene3D - 638 709 - -
Gma20g01537 962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 464 687 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01537 Gma-Chr20 42380938 42391921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01537 453 697 Calmodulin-binding Proteins AT3G56690 38.645 1.45e-41 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01537 - - gmx:100793760 1441.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01537 20 42380938 42391921 Gma20g01537 20 42380938 42391921 ECH
Gma10g02180 10 49392808 49399801 Gma20g01537 20 42380938 42391921 GST
Gma16g01519 16 35080779 35088291 Gma20g01537 20 42380938 42391921 PCT
Gma20g01537 20 42380938 42391921 Gma09g01199 09 32767681 32774819 PCT