Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01526 ATGGTGTCAAAAAATCCGAACCCCTCTGAGGCTTTTTACTTGGACCCCTCCGGCATGTCGCTCCCCGGAATCCTTCCCTTCGCCGCCGCAGCCACCGCCACCGCAGATTCCTTTGAGGACCCTGCTAAGAAGACTCGCAAGCCTTACACTATTACCAAGTCTAGGGAGAGTTGGACCGAACCTGAGCACGACAAGTTCCTCGAAGCTCTTCAGTTATTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTTGGATCaAAGACAGTCATCCAGATACGTAGCCATGCTCAGAAATACTTTCTAAAAGTTCAGAAGAGTGGGACAAATGAACATCTTCCTCCACCCAGACCAAAAAGAAAAGCTGCTCATCCATATCCTCAGAAAGCTTCAAAAACTGCTCCAGTACTCTCACAAGTATCAGGATCCTTTCAATCTTCATCAGCTTTGCTTGAACCTGGATACATATTAAAGCATGACTCTTCAGCAATGCCTAAAACTCCCATTATTAACACTGCAGTGTCTTCCTGGTCAAACAACTCTCTGCAGAAAACCACCAGCGTATTGCATGGGCAAAAACAAAAAGTGAATAATTGTTGCAGTAGCAGTAGAAGTCCTAGAGCGCAGTTGGTTGGTGAATCTAATGGTCAAAGGAATAACAGCCATCCATTGAGAGTTCTTCCGGATTTTGCCGAAGTATACAGCTTCATTGGCAGTGTATTTGATCCAAATGTAACTGGACATGTACAGAAACTAAAAAGGATGGACCCTATAGATGTTGAGACGGTGCTATTGTTGATGAGAAACCTGTCTATCAATTTAGCAAGCCCAGATTTTGAGGACCATAGAAGGCTGCTTGCATCATATGAGGTGGAACCTGAGGTCGATAAATATAAATGCAGATTGAACCATGCTTGA 915 0.4415 MVSKNPNPSEAFYLDPSGMSLPGILPFAAAATATADSFEDPAKKTRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTNEHLPPPRPKRKAAHPYPQKASKTAPVLSQVSGSFQSSSALLEPGYILKHDSSAMPKTPIINTAVSSWSNNSLQKTTSVLHGQKQKVNNCCSSSRSPRAQLVGESNGQRNNSHPLRVLPDFAEVYSFIGSVFDPNVTGHVQKLKRMDPIDVETVLLLMRNLSINLASPDFEDHRRLLASYEVEPEVDKYKCRLNHA 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01526 304 MobiDBLite consensus disorder prediction 196 219 - -
Gma20g01526 304 MobiDBLite consensus disorder prediction 104 137 - -
Gma20g01526 304 Pfam Myb-like DNA-binding domain 55 100 IPR001005 -
Gma20g01526 304 ProSiteProfiles Myb-like domain profile. 50 100 IPR001005 -
Gma20g01526 304 CDD SANT 57 100 IPR001005 -
Gma20g01526 304 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 53 102 IPR006447 GO:0003677
Gma20g01526 304 PANTHER PROTEIN REVEILLE 6 3 296 - -
Gma20g01526 304 PANTHER SWI/SNF COMPLEX-RELATED 3 296 - -
Gma20g01526 304 SUPERFAMILY Homeodomain-like 49 105 IPR009057 -
Gma20g01526 304 ProSiteProfiles SANT domain profile. 53 104 IPR017884 -
Gma20g01526 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 50 104 IPR017930 -
Gma20g01526 304 SMART sant 54 102 IPR001005 -
Gma20g01526 304 Gene3D - 58 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01526 Gma-Chr20 42283599 42289582 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma20g01526 Myb_DNA-binding 3.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01526 - - gmx:778166 574.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02193 10 49502266 49507519 Gma20g01526 20 42283599 42289582 GST
Gma16g01538 16 35741107 35748310 Gma20g01526 20 42283599 42289582 PCT
Gma09g01255 09 34249456 34257360 Gma20g01526 20 42283599 42289582 PCT
Gma20g01526 20 42283599 42289582 Gma16g01538 16 35741107 35748310 PCT
Gma20g01526 20 42283599 42289582 Gma09g01255 09 34249456 34257360 PCT