Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01518 ATGTCGTCGCCGAGGTTCCCAGGTGGTGGAGCCTCCGATTTCTACGGCGGAGCAGGAGGATTTCCCAGTCAGTTCACGGCGGTTCAACCCACCATGAACAACCACTCCGCCACCACACCCCGCCCTCTCTACCGATCCCAACCTTCAATTCTGCTTAACCCCTCGTCCCACATCGCCCAACACCAACCATCCCCTCTCATCGGGAAACGCACCCTCGCCGAATTCCAAACCCACAACCTCAACAGCAGCAACAACAACAACAATAACCCACTCCTTTCAAACTATCTACTTCGTTCTGTGAAGCCCAGAACTTTCCAACACACAGAATTATCCACCTTTCCGTCAAATCGTTACGGCCTTCCCCTTCTCCACCACCTTCGCCCTAACGCCGTTAACGCGCAACAACAACAACCGGTTACGAATTCGATCCTCCCCAACACAAATTATTTCCCTCCGGTTCGCAGCAGACTAACCGCACCCCACGAACTGGAGAAGAACTCAATAGACCGCCGCCTCCAGGAGTTGGAAAAGCAGCTTCTAGAAGACAATGAAGACGAACAAGGCGACGCCGTTTCGGTCATTACCAACACCACCACCACTTCCGAATGGTCACACACAATACAAAACCTAATCACTCCGCAGAAACCCACGTCTTCGTCTCCCACTTCCTCTACGACGTCGTCCAACTCCTCCGTGGAATCCACCAGTTCCAAACAGTCCCTAACGGAGGCCGCGATCGCAATTTCAGAAGGCAGGTTCGATACCGCGACGGAGATCCTAACCCGATTATTGCAGAATTCGGATCAACGCTTCGTCAATTGCATGGTTTCCGCGCTCAAATCGCGGATGAATCACGTCGAGTGTCCACCACCGGTAGCGGAATTGTTCAGCATAGAACACGCCGAGTCAACTCAGTTACTATTCGAACACTCGCTCTTCTTCAAGGTCGCGCGCATGGTCGCCAACATCGCAATCCTCGAATCCGCATTAACCGAGAACGGGAAGCTGTGCGTGCTGGATTTCGATATCGGCGACGGGAACCAATACGTGAGCCTTCTCCACGAGCTTTCGGCGCGGCGGAAGGGAGCTCCATCCGCCGTGAAGATCGTCGCGGTGGCGGAGAACGGCGCCGACGAGAGGCTGAACAGCGTGGGATTGTTGCTGGGGAGACACGCGGAGAAGCTAGGGATTGGTTTCGAATTCAAAGTGCTGATTCGGAGAATCGCCGAGTTGACTCGCGAGTCGCTGGATTGCGACGCCGACGAGGCGCTGGCGGTGAACTTTGCGTACAAGCTTTATAGAATGCCTGACGAGAGCGTCTCCACGGAGAACCCACGCGACGAGCTTCTGCGGCGTGTGAAGGCACTCGCGCCGCGCGTGGTGACGCTAGTGGAGCAGGAGGCGAACGCCAACACGGCGCCGTTCGTGGCGCGCGTGTCGGAGTTGTGCGCTTATTACGGCGCGCTGTTTGACTCGCTCGAGTCGACGATGGCGCGAGAGAACTCGGCGCGAGTTAGGATCGAGGAGGGACTGAGTCGGAAGGTGGGGAACTCGGTGGCGTGCGAAGGAAGGAACCGCGTGGAACGGTGCGAGGTGTTTGGGAAGTGGCGAGCGCGTATGAGCATGGCTGGGTTCAGGTTGAAGCCGCTGAGTCAGCGAGTCGCTGAGTCGATCAAAGCGCGACTCGGTGGCGCTGGGAACCGAGTCGCGGTAAAAGTAGAGAACGGTGGGATTTGCTTTGGCTGGATGGGAAGAACTCTCACCGTCGCATCTGCTTGGTGTTAA 1785 0.5647 MSSPRFPGGGASDFYGGAGGFPSQFTAVQPTMNNHSATTPRPLYRSQPSILLNPSSHIAQHQPSPLIGKRTLAEFQTHNLNSSNNNNNNPLLSNYLLRSVKPRTFQHTELSTFPSNRYGLPLLHHLRPNAVNAQQQQPVTNSILPNTNYFPPVRSRLTAPHELEKNSIDRRLQELEKQLLEDNEDEQGDAVSVITNTTTTSEWSHTIQNLITPQKPTSSSPTSSTTSSNSSVESTSSKQSLTEAAIAISEGRFDTATEILTRLLQNSDQRFVNCMVSALKSRMNHVECPPPVAELFSIEHAESTQLLFEHSLFFKVARMVANIAILESALTENGKLCVLDFDIGDGNQYVSLLHELSARRKGAPSAVKIVAVAENGADERLNSVGLLLGRHAEKLGIGFEFKVLIRRIAELTRESLDCDADEALAVNFAYKLYRMPDESVSTENPRDELLRRVKALAPRVVTLVEQEANANTAPFVARVSELCAYYGALFDSLESTMARENSARVRIEEGLSRKVGNSVACEGRNRVERCEVFGKWRARMSMAGFRLKPLSQRVAESIKARLGGAGNRVAVKVENGGICFGWMGRTLTVASAWC 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01518 594 ProSiteProfiles GRAS family profile. 228 594 IPR005202 -
Gma20g01518 594 MobiDBLite consensus disorder prediction 211 240 - -
Gma20g01518 594 Coils Coil 165 185 - -
Gma20g01518 594 PANTHER SCARECROW-LIKE PROTEIN 8 61 594 IPR030013 -
Gma20g01518 594 Pfam GRAS domain family 238 593 IPR005202 -
Gma20g01518 594 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 61 594 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01518 Gma-Chr20 42226137 42228391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01518 31 593 GRAS Transcription Factor Family AT5G52510 46.311 1.16e-146 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma20g01518 GRAS 1.7e-91 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01518 - - gmx:100800097 1083.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02203 10 49597538 49599310 Gma20g01518 20 42226137 42228391 GST
Gma16g01550 16 35838827 35841194 Gma20g01518 20 42226137 42228391 PCT
Gma09g01274 09 34661290 34663837 Gma20g01518 20 42226137 42228391 PCT
Gma20g01518 20 42226137 42228391 Gma16g01550 16 35838827 35841194 PCT
Gma20g01518 20 42226137 42228391 Gma09g01274 09 34661290 34663837 PCT