Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01506 ATGGGTAGCATCGTGGAAGACGCCGACACAGACACGGTGTATGTGGCGGTCGGAAAGAACGCCGAGAAGACGCAGCAACTGTTGCATTGGACGGTTAAGAATTTCTCCGGCAAAGAAATCTGCCTTCTTCATATTCACCAACCTCACTCTCTCAATTCATTCTCTGACAGAAATCTCTCTGGGTATGAACCAAAAGACCATGCGATCAAAGCATtccaggagcatggaaatcaaaaagtgcatgaacttctagaccaatacattctcactctggtcccagcagggGTACGAGCCTACAAATTGTTGATTGAGATGGATGATATTGAGAAAGGAATCACAAAAGCTATTGCTCAACACAATATTAGATGGCTTGTAATGGGAGCAGCAGCAGCAGACGGATATAACTTGGGCAAACTGGCTAAGCAAGAGTCGGAGAAAGCTATTTTTGTACGTGAACAAGCATTGCTATCCTGTAATACGTGGTTCATTTGCAAGGGTAACGTCATATGTAATAGGGAATATAGTAAGCATACTTCTGACATAGAGACTGGCCCTGCACTGCTGGTGCTCAATCAAAATACAGATGCCAAGCAATCAGAAAAGATCAAATCAGAATCGATTCCTGATGATGCATTGAAATATTTTGATTTTGATGATATGAAAGAGATAAAAAGTGTCCATTCCCACCATTCCTTAAATTCAAAATGGCCGTTTAATAATGTCATGCACAGGTCAAAATTGGCAGATATGATGTTTCATGAGGATGAAGAATTTGAAAGCCAGTGTGCTAAGGAGATCCAAAGAAGAAAAGAAGTTGAAGAACAATTGGCAAGGGAAAAGCAAGAAGTACAGAAAATGAAGAATCAGCGAGATGAAATACTTGAAGAATTGCAAATGGTCCAAGACCAAAATTCAGCACTTATGAACCAAATTTCTGAGTCCCAGTGTACGGAAACAGAGTTGGAGGAGAAGATCATATCAGCTGTGGACCTCTTGATAAGTTTCAGGGAACAGAGAGATAGGCTTAGGATAGAGCATGCAAATGCACTTAGGGAAGTAAAAGTGCTGAGAAGATTTGGGGAAGCAGGTACTTCCTCTTATCGGGTAGAATTCCCTGCATTTTCTTTTGTGGAGATCAATGAGGCAACTAATGATTTCGATCCATCTTGGAAGATTGGAGAGGGAAGGTATGGAAGTGTTTACAAGGGACTGCTTCGCAACATGCATGTTGCCATAAAAATGTTACCCTCTTATGGTCATCAGAGTGTATTAGAGTTCCAACATCAGGTAGAGGTCTTGAGTAGGGTAAGACATCCAAACCTGTTAACACTAATGGGAAGCTGTGCAGAGTCTAGGTCTCTTGTGTATGAGTACATAAACAATGGCAGCCTCGAAAGCCATCTAGCCCACAAAGAAAAGAATCCACTTCCATGGCAAATTCGAATATCCATTGCTACTGACATATGCTCTGCTCTAATCTTCCTTCACTCTAGTGGGCCTTGTATTATCCATGGGAATTTGAAACCTAGTAAGGTTCTCCTTGATGCCAACTTTGTTGCCAAACTCAGTGACTTGGGCATTCCCAGTTTAGTCCAGCAAAGTTTGGATTCAGCTGACACAAGCACAATATGTAATAACCCAAATGAAAGTTTGGCTTATGTGGATCCAGAGTATTTTGTCACTGGCAAGCTTACACCAGAATCGGATGTATATTCTTTTGGAGTCATATTGTTACAACTTCTAACTGGAAGACCCCTTTTGGGGCTAGTTAGAGATATGAAATGTGCATTGGAAAAGGAAAATTTTAAAGCAATCTTGGACTTTTCATCTGGTGAATGGCCGCTTTTTCAAACCGAACAGCTGGCATATTTAGCATTGAGGTGTTGTGAAAAGACTTGGTTGAACCGGCCAGACCTTGTGTCAGAAATCTGGAGTGTTCTTGAACCATTCAAAGCTACTTGCATTGACACGTCATCACATTTGATTTCTAAGAAGCTTCGTCGTGTTCCTTCCCATTTTGTGTGCCCCATTGTCCAGGAAGTAATGGAAGATCCATACATAGCTGCAGATGGCTTTACGTATGAAGAAGAGGCAATAAGAGGATGGTTGAATAGTGGCCACGACACTTCCCCCATGACAAACCTCAAACTAGATCACACAGATTTGAGTGGGTCCTCAGCGATCAACGATTGTGAACTGTTGTTACCGAGAATAAACGTTTTTCGCCCCCTGCAAGAACGACACAGAGTTCTCTCCCATACTCTATTTTCTCGCATTTTCTCGACGATTTTCCTTCCATCCAAACACTCCCAATCCCTTCGCAGCCGCTTGCGGTTTATCTTCGGATCCTCACAAGAGAATCTCTTCGGCTTCCAAGCGATCTCTCCCTCGTCCTTCCTCCCTGTCAAATCCTTCAAAGTTTCTTATACAATAATTAGACAAGCAATTGGAAAAGAACCTTTGCTTTCCTTTCCTAGGGCCGGTGTCAGCCCAGTACAGTGGATTCAATTACTTAATGCTTTAGATCAGCAAGGGTTGCCTTTGCTCTCTCCTGTGAAGGTTCATTTACAGAAGTGCAACAAGTGTTCTCGAGAATTTTGCTCTCCCATTAACTATAGAAGACATATACGCATACAGCATCGATTGAAAAAGCTTGATAAGGATTCTGATAAAAATAGGGATCTTTTAGGGGCATATTGGGATAAGCTCTCCGTAGAAGAGGCAAAGGAAGTTGTGTCATTCAAGAATGTGATGCTGGAGGAAGTTCCAGGGTCTTCAATTTTAGAAGCTTTGACAACTCTTAGGAAACAAGGATTTTCCTCTCTTCCACAATATTATCTGAGGGCTGGTTCTGCCCTTTTGAATATTGTTCAATCCAGGCCTTCTAGTTTTCCTAAATCTTCCCAAGAGTTATTCAGTATCTTAGATGATTCTAGTGAAAAAACATTTTTGGTTGGATCAGCAGTATCAATGCAAAGATATGTTTTTGATGGAGAGGCTGGAAAGATTGGTCTTGAACCAAAAAACCTAGTTGCTTGCACAAGTTTCTTGCTAGAGCAGAATCTGGTGAAGGCCTGGCTTGCTGACAAGGATGCTGAAGCATTGAGATGCCAGAAGCTGCTGGTGGAGGAAGAGGAAGCTGCTCAGAAAAGAAAATATGAGATTTTAGAGAGGAAACACCAGAAAAAGCTTAGACAGAAAGAACACAAGGCAAGGGAACGACTCGAAGATGACACAGAAATTAAAGAGAACATACGCAGCACAGGAGAGGATGTTTCACCAACTGAAGCATCTTCTGGTACATGTGACTTTGAAGCACATAATCCAGATATATTTGCGGATCATTCTACTCCTCCACATGTAACTTCTCGCTGCCTAGACAATGATGAAGTTATAGAAGGGGTTACACTGTCAGGGTATGATTTTGACACTGATCAGTATATAGAACGACAGACATCACGAGGACATAATCACCGGCGCATAATGGCTACCAGATGGCAAGGGCTGCCAAAATCTCAATGGGCCATAGCCAATGGTTCGCATCCAGGCCATAATTCTCAAATGTCAAAGCTTGGAGTCATTCAAAAACATGGAACCAACTGTGATCAAAGGGTAGCTCCTATAGTTAATGGTAGTAAGTTTTGGAGCCGAAAACCTAAACCAGAAACTAATGGGGTGGTTTTAAAGGCCAGACTGCAGAAAGAACCAGACAAATGTAAGAATCATGAAGTTTTGATAGGATCTGTATCAGTTTGTCTGGGAAATTGCAGCCATTCAGAAGGGAATTTGGTGGCACCCCAGCGGGACAGCTTGGTAGATAATCTAGCCAAGCAGAATACTGCTCAGGAGAAGCCAGTGAAACATGATTCCTCTCAGGGAAGTAACGGTCGGTTAACAGTTAAACTTTGGAGGCCGGTTAGCCAGCATGGAACTAAAGATCTATTGCCACTTCAAAATGGTGGTACAGAAGCTGATGTAATTAATGGAAAATATGACCTAAATTTGTCAGGTCAATGTAGTTTGAGGTTGTGTAGTATAGATGGTAGTGATATTGGTTTTGGGGACAATTTTTCCCACACTGGAGATTCAGAAAGCTTACGTCTATCCAGCCATGCTGCAAAAGCCTTTCTTGTACAAAGATGGAAAGAAGCTATCTCATCAAACCATGTGAAGTTGTTTGTTACACCTGATTGTCAATCTTCTAATGCGGACAGATGTAGCATTATTGCAAATTCAGAGAACCGATTGCCTGCAACCTCTGGAGTTGCCAAATCCAAACCCAAAACGAAGCTTGAGAAGGGAATGAAGATAAAGTACATTCCCAAACAAAAAGCAACAACCTAG 4344 0.4118 MGSIVEDADTDTVYVAVGKNAEKTQQLLHWTVKNFSGKEICLLHIHQPHSLNSFSDRNLSGYEPKDHAIKAFQEHGNQKVHELLDQYILTLVPAGVRAYKLLIEMDDIEKGITKAIAQHNIRWLVMGAAAADGYNLGKLAKQESEKAIFVREQALLSCNTWFICKGNVICNREYSKHTSDIETGPALLVLNQNTDAKQSEKIKSESIPDDALKYFDFDDMKEIKSVHSHHSLNSKWPFNNVMHRSKLADMMFHEDEEFESQCAKEIQRRKEVEEQLAREKQEVQKMKNQRDEILEELQMVQDQNSALMNQISESQCTETELEEKIISAVDLLISFREQRDRLRIEHANALREVKVLRRFGEAGTSSYRVEFPAFSFVEINEATNDFDPSWKIGEGRYGSVYKGLLRNMHVAIKMLPSYGHQSVLEFQHQVEVLSRVRHPNLLTLMGSCAESRSLVYEYINNGSLESHLAHKEKNPLPWQIRISIATDICSALIFLHSSGPCIIHGNLKPSKVLLDANFVAKLSDLGIPSLVQQSLDSADTSTICNNPNESLAYVDPEYFVTGKLTPESDVYSFGVILLQLLTGRPLLGLVRDMKCALEKENFKAILDFSSGEWPLFQTEQLAYLALRCCEKTWLNRPDLVSEIWSVLEPFKATCIDTSSHLISKKLRRVPSHFVCPIVQEVMEDPYIAADGFTYEEEAIRGWLNSGHDTSPMTNLKLDHTDLSGSSAINDCELLLPRINVFRPLQERHRVLSHTLFSRIFSTIFLPSKHSQSLRSRLRFIFGSSQENLFGFQAISPSSFLPVKSFKVSYTIIRQAIGKEPLLSFPRAGVSPVQWIQLLNALDQQGLPLLSPVKVHLQKCNKCSREFCSPINYRRHIRIQHRLKKLDKDSDKNRDLLGAYWDKLSVEEAKEVVSFKNVMLEEVPGSSILEALTTLRKQGFSSLPQYYLRAGSALLNIVQSRPSSFPKSSQELFSILDDSSEKTFLVGSAVSMQRYVFDGEAGKIGLEPKNLVACTSFLLEQNLVKAWLADKDAEALRCQKLLVEEEEAAQKRKYEILERKHQKKLRQKEHKARERLEDDTEIKENIRSTGEDVSPTEASSGTCDFEAHNPDIFADHSTPPHVTSRCLDNDEVIEGVTLSGYDFDTDQYIERQTSRGHNHRRIMATRWQGLPKSQWAIANGSHPGHNSQMSKLGVIQKHGTNCDQRVAPIVNGSKFWSRKPKPETNGVVLKARLQKEPDKCKNHEVLIGSVSVCLGNCSHSEGNLVAPQRDSLVDNLAKQNTAQEKPVKHDSSQGSNGRLTVKLWRPVSQHGTKDLLPLQNGGTEADVINGKYDLNLSGQCSLRLCSIDGSDIGFGDNFSHTGDSESLRLSSHAAKAFLVQRWKEAISSNHVKLFVTPDCQSSNADRCSIIANSENRLPATSGVAKSKPKTKLEKGMKIKYIPKQKATT 1447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01506 1447 Pfam Protein tyrosine and serine/threonine kinase 391 639 IPR001245 GO:0004672|GO:0006468
Gma20g01506 1447 Gene3D Transferase(Phosphotransferase) domain 1 460 660 - -
Gma20g01506 1447 SUPERFAMILY Protein kinase-like (PK-like) 366 645 IPR011009 -
Gma20g01506 1447 CDD RING-Ubox_WDSUB1_like 673 714 - -
Gma20g01506 1447 ProSiteProfiles Protein kinase domain profile. 386 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01506 1447 Pfam U-box domain 669 725 IPR003613 GO:0004842|GO:0016567
Gma20g01506 1447 ProSitePatterns Zinc finger C2H2 type domain signature. 859 880 IPR013087 -
Gma20g01506 1447 Coils Coil 332 352 - -
Gma20g01506 1447 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 22 130 - -
Gma20g01506 1447 SMART Ubox_2 672 731 IPR003613 GO:0004842|GO:0016567
Gma20g01506 1447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 662 726 IPR013083 -
Gma20g01506 1447 ProSitePatterns Protein kinases ATP-binding region signature. 392 413 IPR017441 GO:0005524
Gma20g01506 1447 Gene3D Phosphorylase Kinase; domain 1 361 458 - -
Gma20g01506 1447 ProSiteProfiles Zinc finger C2H2 type domain profile. 857 885 IPR013087 -
Gma20g01506 1447 PANTHER OS02G0152300 PROTEIN 8 722 - -
Gma20g01506 1447 Gene3D HUPs 12 141 IPR014729 -
Gma20g01506 1447 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 8 722 - -
Gma20g01506 1447 ProSiteProfiles U-box domain profile. 668 722 IPR003613 GO:0004842|GO:0016567
Gma20g01506 1447 Coils Coil 262 310 - -
Gma20g01506 1447 CDD STK_N 12 166 - -
Gma20g01506 1447 SUPERFAMILY RING/U-box 664 723 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01506 Gma-Chr20 42134206 42154289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01506 11 728 U-box Gene Family AT2G45910 41.296 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gma20g01506 PK_Tyr_Ser-Thr 4.4e-36 CL0016
TF C2H2 Gma20g01506 PK_Tyr_Ser-Thr 4.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01506 - - gmx:100787938 1447.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02215 10 49702016 49707610 Gma20g01506 20 42134206 42154289 GST
Gma16g01565 16 36065956 36075941 Gma20g01506 20 42134206 42154289 PCT
Gma09g01302 09 35326168 35328718 Gma20g01506 20 42134206 42154289 PCT
Gma20g01506 20 42134206 42154289 Gma16g01565 16 36065956 36075941 PCT
Gma20g01506 20 42134206 42154289 Gma09g01302 09 35326168 35328718 PCT