Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01498 ATGCCAGAATCTGAGGAAGAAAACCAAGACTATGTTCCCAGGTCAAAGCCATCAGAGGAAGCTGGTGGTGGCTGCACCATGGACTTCGATCTGGACTTAGAAACTTCATGGCCTTTGGATCACATGGCCTTTGGCTCCAACCCCATGTCACCTTTTTTGTTCTCCACTTCCTCTGACCAACCTTACTCTCCCCTTTGGGCTTTCTCTGATGGAGAAGACCCCAAGCTTCCAGCTTCTGCCTTCTCTGATTGCCACAAGATCTTCTCTTGTGATTCAAATTCAATAGCTGAAAAGCCAGTGGAGAATGATGACAACAAAAAACTTTTGCCACCACTTGTTCCTATTTCACCAGTGGAAAATTTGGATGGTTATTGTGTAATCAAGGAAAGGATGACACAAGCACTTCGTTACTTCAAAGAGTTGACTGAATTGAATGTTCTGGCTCAAGTTTGGGCACCTGTGAAGAATGGTAATCGGTATGTGCTTACAACTTCAGGTCAACCCTTTGTTCTTGATCCACATAGTAATGGGCTCTATCAGTATAGAACGGTCTCTCTGATGTACATGTTTTCTGTGGATGGAGAGAATGATGGAAGTTTGGGACTCCCTGGTCGGGTTTTTCAGCAGAAATTACCGGAATGGACTCCCAATGTTTTGTATTATTCTAGTAAAGAGTATCCACGCCGAGATCATGCTCAACATTACAATGTTCGTGGAACGTTGGCTTTGCCTGTGTTTGAACCTTCAATACAGTCATGTGTTGGTGTATTGGAGTTGATAATGACTTCACAGAAAATTAACTATGCTCCCGAGGTTGATAAAATCTGCAAAGCCCTTGAGACAGTAAATTTGAGGAGTTCGGAAATTTTGGATCATCCACACACTCAGATTTGTAATGAAGGTCGTCAGAATGCATTATCAGAGATCTTGGAGATATTGACAGTGGTATGTGAAACTCACAATTTACCTCTGGCCCAGACATGGATTCCCTGTAAGCATCGAAGTGTTTTGGCCCAAGGTGGTGGTGTAAAGAAAAGTTGTTCTAGTTTTGATGGTAGATGCATGGGGAAAGTTTGCATGTCTACAACTGACATAGCATTTTATATTATAGATGCTCATTTATGGGGTTTTCGTGAGGCCTGTGTTGAGCATCACTTACAACAAGGTCAAGGGGTTGCTGGGAGGGCTTTTTTGTCCCACGGCATGTGCTTCTGTTCAAACATTACCCAATTCTACAAAACTGATTACCCCTTAGTTCATTATGCTCTCATGTTTGGGTTAACAAGCTGTTTTGCAATATGTTTACGAAGCTCTCATACAGGAAATGATGATTATGTATTAGAGTTTTTTCTGCCTCCTAGAATAACACACATTCATGAACAAAAGACTTTGTTGGGATCCATATTGGCAATAATGAAACAGCATTTCCAGAGTCTTCATATTGCTTCTGGTGTAGAACCTGAGGATGGTTCAATTGAAATTATTGAAGCAACAATCGAAAGAGTTCATACGAGGCTTGAATCTATTCCTATTGCTTCATCTATTAAATCACCACCTAGACCTGATACCTCACCAAACATGGGGGAGGAAGTGCCACAGGATCCATCAGAACAACAAATATTGATGTACTGTAATGACATCAATAATGGAGGGAGTCTTGGTGAAAATGCAGCCAGAAACATTGATCACATGCCCTCCTTAGAGACTAAAAACATAAATAAACCCTTAGAGAGGAAACGTGGAAAAACTGAGAAATCAATTAGTCTTGAAGTCTTGCAACGTTATTTTGCTGGGAGTCTAAAAGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACCACAATGAAGCGCATCTGCAGGCAGCATGGGATATCCCGTTGGCCATCTAGAAAGATCAACAAGGTTAACCGTTCCCTGTCGAAGCTCAAGCGTGTTATTGAATCTGTCCAAGGTGCTGAAGGAGCATTTGGTTTGAATTCTCTGAGCAAAAGTCCACTTCCCATTGCTGTTGGTTCCTTTCCTGAGCCTTCTACTCCAAACAAGTTCAGCCTGCCAGCCTCATTAAGTATTAATCCATCAGAGCCTCAGATCAAAGAGAATGAATTGAATGCCTCCAAAGCATTAGAAACAAACAGTCAGGCTGTAATGGAAGAAGATCGATTGCTAGGAGGCAGGACACCACATCTTGAGAAAGTAATTAACGATAAAGGTAGGCATACTCGAGAGGTTGGGAAAGAACCAAAGAGGACTAGAACTGGGAGTGGCTCAAGTGAGGATAGCACAAATCCTACTTCTCATGGTTCATGCCATGACAGTCCCCCAAATGAAAGTTCACCGGTGAAGAATATATTCATTACTTCCAATAATGATCAATGTGCTGGGCTAAAGAGATCACCAGAGTCAACATTGCAGCTAACTACTAATACGCCAAACCGGCCAGCTGCTTACCCTATGCCCGACTTTGTGGCCGCAGAACTTCAAGAGCCATTTGGTGGGATGCTAATAGAGGATGCTGGTAGTTCTAAAGACTTAAGAAATTTGTGTCCTTCAGTAGCTGAGACCATTTTGGAGGATATGGTTCCAGAAGCTTGTGGGACTAATATTCCAGGTCCAGATTTGTCTCCTAAGCAAAGCATGGGTACTCCTAACAAAGCAGTGACACCTTTTGTAGCTATGAAAGAAATGAAGACAGTGACAATCAAGGCAACATACAGAGAAGATATCATAAGATTTCGGGTCTCGTTGACCTGTGGCATTGTTGAACTGAAAGAAGAAGTTGCCAAAAGATTGAAACTAGAGGTGGGTACATTTGAAATCAAGTACCTGGATGATGATCACGAATGGGTTTTGATAGCCTGTGATGCAGACCTACAGGAGTGCATGGATGTTTCAAGATCATCAGGAAGCAAAATAATCAGGGTTTTGGTGCATGACATAACTTCAAATCTTGGAAGCTCATGCGAGAGCTCGGGGGAGTGA 2976 0.4241 MPESEEENQDYVPRSKPSEEAGGGCTMDFDLDLETSWPLDHMAFGSNPMSPFLFSTSSDQPYSPLWAFSDGEDPKLPASAFSDCHKIFSCDSNSIAEKPVENDDNKKLLPPLVPISPVENLDGYCVIKERMTQALRYFKELTELNVLAQVWAPVKNGNRYVLTTSGQPFVLDPHSNGLYQYRTVSLMYMFSVDGENDGSLGLPGRVFQQKLPEWTPNVLYYSSKEYPRRDHAQHYNVRGTLALPVFEPSIQSCVGVLELIMTSQKINYAPEVDKICKALETVNLRSSEILDHPHTQICNEGRQNALSEILEILTVVCETHNLPLAQTWIPCKHRSVLAQGGGVKKSCSSFDGRCMGKVCMSTTDIAFYIIDAHLWGFREACVEHHLQQGQGVAGRAFLSHGMCFCSNITQFYKTDYPLVHYALMFGLTSCFAICLRSSHTGNDDYVLEFFLPPRITHIHEQKTLLGSILAIMKQHFQSLHIASGVEPEDGSIEIIEATIERVHTRLESIPIASSIKSPPRPDTSPNMGEEVPQDPSEQQILMYCNDINNGGSLGENAARNIDHMPSLETKNINKPLERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGLNSLSKSPLPIAVGSFPEPSTPNKFSLPASLSINPSEPQIKENELNASKALETNSQAVMEEDRLLGGRTPHLEKVINDKGRHTREVGKEPKRTRTGSGSSEDSTNPTSHGSCHDSPPNESSPVKNIFITSNNDQCAGLKRSPESTLQLTTNTPNRPAAYPMPDFVAAELQEPFGGMLIEDAGSSKDLRNLCPSVAETILEDMVPEACGTNIPGPDLSPKQSMGTPNKAVTPFVAMKEMKTVTIKATYREDIIRFRVSLTCGIVELKEEVAKRLKLEVGTFEIKYLDDDHEWVLIACDADLQECMDVSRSSGSKIIRVLVHDITSNLGSSCESSGE 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01498 991 Pfam RWP-RK domain 586 634 IPR003035 -
Gma20g01498 991 SMART PB1_new 896 978 IPR000270 GO:0005515
Gma20g01498 991 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 990 - -
Gma20g01498 991 MobiDBLite consensus disorder prediction 716 813 - -
Gma20g01498 991 MobiDBLite consensus disorder prediction 753 812 - -
Gma20g01498 991 CDD PB1_NLP 897 977 IPR034891 -
Gma20g01498 991 SUPERFAMILY CAD & PB1 domains 892 981 - -
Gma20g01498 991 PANTHER PROTEIN NLP8 3 990 IPR045012 GO:0003700
Gma20g01498 991 Gene3D - 893 977 - -
Gma20g01498 991 MobiDBLite consensus disorder prediction 1 27 - -
Gma20g01498 991 ProSiteProfiles RWP-RK domain profile. 573 654 IPR003035 -
Gma20g01498 991 MobiDBLite consensus disorder prediction 720 752 - -
Gma20g01498 991 MobiDBLite consensus disorder prediction 510 533 - -
Gma20g01498 991 Pfam PB1 domain 896 977 IPR000270 GO:0005515
Gma20g01498 991 ProSiteProfiles PB1 domain profile. 896 978 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01498 Gma-Chr20 42100601 42105526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01498 261 991 NLP Transcription Factor Family AT4G24020 52.312 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gma20g01498 PB1 2.7e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01498 - - gmx:100785821 2008.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02222 10 49751907 49756953 Gma20g01498 20 42100601 42105526 GST
Gma16g01571 16 36129336 36133695 Gma20g01498 20 42100601 42105526 PCT
Gma09g01309 09 35410766 35415255 Gma20g01498 20 42100601 42105526 PCT
Gma20g01498 20 42100601 42105526 Gma16g01571 16 36129336 36133695 PCT
Gma20g01498 20 42100601 42105526 Gma09g01309 09 35410766 35415255 PCT