Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01490 ATGCAGCAAGCTCCAACCACACTCACCGGATTGCTCCATCGCGTCGCCGGAATATTCCCCTCCCGCCGCGCCGTCTCCGTCTCCGGCAAGTTCGACCTCACGCACTCCCGTCTCCACCACCTCGTCGAACTCGCCGCCTCGCGCCTCTTCTCCGCCGGCATCAAACCCGGCGATGTCGTCGCCCTCACCTTCCCCAACACCGTCGAGTTTATAATAACGTTCTTGGCCGTTATTCGAGCGCGAGCCACGGCGGCGCCATTGAACGCGGCTTACACCGCCGAGGAGTTCGAGTTTTATCTATCTGACTCAGATTCAAAGCTGTTACTAACCTCAAAAGAAGGAAACGAGCCGGCTCAAGCCGCGGCTTCCAAGCTTAACATTCCGCACGCAACGGCATGGCTCGCGGAAGCCGAGGAGCTGAGTCTCTCTCTGAGTTCCACCGAGTCAGCAATCGACTCGGTCTCCGAAATCGCCAACGACGCTTCCGACGTGGCACTGTTCCTTCACACTTCCGGCACCACGAGCCGCCCCAAGGGCGTGCCGTTGACGCAGCACAATTTGGCCTCTTCCGTGGAGAACATCAAGTCCGTGTACAGACTCACTGAGTCTGACTCGACCGTGATCGTTCTCCCGTTGTTCCACGTGCACGGCCTGCTCGCGGCGCTGCTCAGTTCGCTAGCCGCCGGAGCCGCCGTGGTTCTTCCGGAGGCGGGGAGGTTCTCCGCCTCCACGTTCTGGAGCGACATGGCGAGGTACGACGCCACGTGGTACACCGCGGTTCCCACCGTGCACCAGATCGTGCTGGAGCGTCACTTAAAAAACGCGGAACCGGTTTACCCGAAGCTCCGGTTTATCCGGAGCTGTAGCGCGTCGCTTGCACCGGCAATATTGGAACGGTTGGAGGAGGCGTTCGGTGCACCGGTTTTGGAGGCGTATGCGATGACGGAAGCCTCGCATTTGATGTCGTCGAATCCGTTGCCCGAAGATGGGCCTCACCGAGCCGGGTCGGTTGGAAAGCCCGTGGGCCAGGAAATGGTGATATTAAACGAGAATGGTGAGATTCAAAAGAATGAGGTGAAAGGTGAGGTTTGTATTAGAGGACCTAACGTGACCAAAGGGTATAAAAACAACCCTGATGCGAATGATTCTGCGTTTCAATTCGGGTGGTTCCACACTGGTGATATCGGGTTTTTTGATTCGGATGGGTATTTGCACCTTGTTGGTCGCATCAAGGAGCTTATTAACCGTGGAGGGGAGAAAATATCACCAATAGAGGTTGATGCTGTCCTTCTATCTCATCCAGACATTGCTCAGGCAGTTGCATTCGGAGTACCAGATGACAAATATGGCGAAGAGataaattgtgcaatcatcccaaaagaaggatcaaacattgatgaggcagaggtgcagagatttagcaagaagaaccttgcagccttcaaagtccctaaaaaggtcttcttcactgattctttgcccaagactgcaactggcaagattctaaggcgtcttgtagcagaacactttgtttctcaaacttga 1545 0.4964 MQQAPTTLTGLLHRVAGIFPSRRAVSVSGKFDLTHSRLHHLVELAASRLFSAGIKPGDVVALTFPNTVEFIITFLAVIRARATAAPLNAAYTAEEFEFYLSDSDSKLLLTSKEGNEPAQAAASKLNIPHATAWLAEAEELSLSLSSTESAIDSVSEIANDASDVALFLHTSGTTSRPKGVPLTQHNLASSVENIKSVYRLTESDSTVIVLPLFHVHGLLAALLSSLAAGAAVVLPEAGRFSASTFWSDMARYDATWYTAVPTVHQIVLERHLKNAEPVYPKLRFIRSCSASLAPAILERLEEAFGAPVLEAYAMTEASHLMSSNPLPEDGPHRAGSVGKPVGQEMVILNENGEIQKNEVKGEVCIRGPNVTKGYKNNPDANDSAFQFGWFHTGDIGFFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPKEGSNIDEAEVQRFSKKNLAAFKVPKKVFFTDSLPKTATGKILRRLVAEHFVSQT 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01490 514 Gene3D - 2 409 IPR042099 -
Gma20g01490 514 PANTHER OXALATE--COA LIGASE-LIKE 6 513 - -
Gma20g01490 514 CDD FACL_fum10p_like 20 508 IPR045310 GO:0016874
Gma20g01490 514 Pfam AMP-binding enzyme C-terminal domain 425 500 IPR025110 -
Gma20g01490 514 ProSitePatterns Putative AMP-binding domain signature. 167 178 IPR020845 -
Gma20g01490 514 Pfam AMP-binding enzyme 16 416 IPR000873 -
Gma20g01490 514 SUPERFAMILY Acetyl-CoA synthetase-like 5 512 - -
Gma20g01490 514 Gene3D - 410 512 IPR045851 -
Gma20g01490 514 PANTHER ACYL-COA SYNTHETASE 6 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01490 Gma-Chr20 42001690 42005345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01490 6 513 Monolignol Biosynthesis Gene Families AT4G05160 30.667 3.28e-66 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01490 K22133 - gmx:100783685 948.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01490 20 42001690 42005345 Gma20g01490 20 42001690 42005345 ECH
Gma09g01328 09 35875520 35880034 Gma20g01490 20 42001690 42005345 PCT
Gma20g01490 20 42001690 42005345 Gma09g01328 09 35875520 35880034 PCT