Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01488 ATGGTTAGCCAAAGGCAGCGACTTGCTCGAAAGCGATACAAAGCGGAACACCCTGAGCTCTTTCCGAAGCCCGAGCCCACACCCCCCAAAGACCCCGAGAATAAGAAAAAGAAGAAGAAAAACAGCGCTTTCAAGCGCAAAAGGCCCGAGCCCAAGCCCGGCTCCAGAAAAAGACACCCTCTCAGAGTCCCCGGCATGAAGCCCGGCGAGAGCTGCTTCATCTGCAAGGCCATGGACCACATCGCCAAGTTCTGCCCCGAAAAAGCAGAATGGGAAAAAAACAAGATATGTTTGCGGTGTCGACGGCGCGGTCATAGAGCTAAGAACTGCCCTGAGGTGCTAGATggcgccaaggatgccatgtattgctataactgtggggaaaatggtcactctctcacacaatgtcctcaccctCTACAAGAAGGAGGGACAAAGTTTGCTGAGtgctttgtctgtaatcaacgtggacacttgagtaaaaactgtcctcaaAATACTCATGGCATTTATCCAAAGGGTGGTTGCTGTAAAATATGTGGTGGTGTGACACATTTGGCAAAGGATTGCCCTGACAAAGGGAAGAGTGGATCTGTTGCTGCTAACAGGCCTGCTGATGGATGGATGAGAATTGAAGAGAGGCCTATGGGTCAGGTTACCAAATTTGTCAGCGGGGATGATATTGAGGATGACTTCATGACAGATGACATACATAGTGGAGACAAGAAAAAGCCAGCAAAGTCAACAGAAGACCATAGCGAGTTCTCCGATGCGAAGAAGCGCAGAGAGGAGGACAACCCTCAAACACTCGTTTCCCTCGTACGCGACAGTGAGaagaagaagagaaagagaaagagaaagaagaaaATCGAGGAATCAAACGAGCAGCCCCAGGTTGAGGTATGCCCTAAATCCTTAGTAGACTCGGTTATCCCAATTGTTGCACAAAAGGAAAATGCTGAAACCACCACAGAGAATTCTAACCCAACCCCcaagaaaaagaagaagaagaagaataagaatgtgcaagatgcagagcaacttctgacttgtgatccttcaattgcgattggtgcggtacctgatgttacgaaagaaggaggatcacaacaaggtgatgctaatgggaatgggggtttatgccctaagcccttgttggacacaccaatcccaattgttccacaagagggaaatgctaaaacatctacacagaaccctaacccaatcccccagaaaaagaagaagaagaagaatgtgcaaggtgcagagcaacatctgacgtgtgatccttcaatcctaatagatgtggaacctgatgttaccaaggaagtaggggcacaacaaatttcagaaacagctgaaacaactacacatgaccctgttccaacccccaagaaaaacaagaataaggatgtgcaagtcgcacaacagcaacttcacacatgcgacccttcaatcccgacaagtgccgaacctgatgttatgaaggaagaagcaacaaaacaaggtgatgctgatgggaatgagggtttatgccctaaacccttactggacaaaccaatcccaatttttccacaagaagaaaatgctgaaacatctaggcagaaccctaatccaaccccccggaaaaagaagaagaagaatgttgaaggtgcagagcaagttcagacatgtgatccttcaatcctgactggtgtggaacctgatgttatgaaggaagaaggggcacaacaaggttcagacctgccagctgaaacaactagacagatccatgccccaacccccaagaaaaacaagaagaaggatgtgcaaggtgcacaacagcaacttcagacatgcgacccttcaatcatgataggtgtggaacccaatgttatgaaggaagaaggagcacaacaaggtgaAGCTAATGAAACTGCGGTCTTTGGAATAAATGAAGAATGCCCTGGACCTGATTCAATGCCCCTGAAAGACACTCTCCGGAAAAAGAAGAATGTGCTTAAGTCCCAGGGGGCTGAACCTGAACCAAAATCAAAGGAGTCCAATAATACACATCACCCTCAACAATGCTACTCAGACTCAGAACTGAAAATGAAGATGAAAAAAGGGGCAGAAGCCAATGCTGAGAACTCTGCAGTGTGCCCTAAACCTAAATTGGCACTCCCATCTGACATAGCAATCCCTAATAATTCACAAGTGAACAAAAGGGCAGAACCAACTGAAGCTAAGGTTGAGGATCAGGCATGTTCTAAACCTAAATTAGCATCCCCAATAGACCTGCCAGCTCCAACAAACTCAGAAAAGAAAAAAGAGGTAGAACCTGTCCAAAACCCTGATGCACGTGCTCAACCCCCTCAACCTCAACCTTGCTCTGCGCCATGTGCAGAGCCTCCGGGTGATCCAGCAACTCCAATTGATCAGAGAAGAAGAAAACAAAAAAGCAAGAGAGAAAAAGAAACAATAATAATATGCTCAGAAGAGGTGGAGAACCAAGGGAGCCCATTGCATATGGACATAACCCTCAACCAGGCCCCAGACCAGGTCCAACAAGACCAAGCAACCCCAATAAGCCTACAACCAGCATCCTTGATGGACCAAACAATCCTGGTGGATCCAGCAACCCCAATAGACCTAGAACTGACGATGAAGAAGATAAAGAAGAAGCAAAGGAAGAAGACAACTTCTACAGAGCTGCCAGAAATCTCAATTCAGACATCTACATGCCTTATAGAAGCATCCCCAATAGACCCAGCAATTCCAATGGACCCTTGCCTTGCAATCTCAACAGGCCCTGAACAGGAGATGTCAAAGAAAAAGAAGAAAAGGAAGAGTAAGCTTGAAAGTGAAGCGGCAGAACTCAATGAACACTACAAGCTGCCTGAAGCTGCTCCGCCTGAGGCCCCTGTTCAGAAATCTATATACCATACAGATGCACCCTCAATCGACCCAGTGGGCCCATCTCCCCCTGTTGACACAGAAACCCCAATAGACCAAGGTCAGCAGATGACCAAGAAAAAGAGGAAGAAGAAAAAGAGGATTGTGATCATAATTGAAGGGACAGAAACCAATGAACACGGTGTCAAGCCACCTGAAACCCTAGTTCAAAAATTTGCATATCCTACAGTAACAACCTCAATAGACCCAACAATCCCAGTCCCAGCTCCCCCAATAGATCAAGGTCAGAAGATGAGGAAGAAAATGAGAAAGAGAAGTGCCCTTATAAGCAAAGGAGCAGAACCTGATGAACATGATGACAAGCCACCTGGAACCCCAGTTCAAAGATCTATACATCCTATAGCAGAACCCTCAATAGACCCAACAATTCCAGCAAGCCAAACTCCTCCAGTAGACCCAGCAACCCCAGTAGACCCTGAACCGATGACCAAGAAAAAGAGGAAGAAGAAAAGGAACAGTGCAAAAAATGAAGGGTTAGAATCTGAGAAACACAATGCTGATCGAATTGCAGAAACCCCAGTTCAAAAAACTGAAGGATCCACAACTGAAAATTCTATGGGCAGATGCAATGTTGAGCCAGCTGGTAAAACCCTGGTTCAGATTACTGACACTCTCAGAGTGACTAAATCCCCCTTTAAACATCATGGTGAAAGTTCCTTGAGATGCCGGGCATGCCGACAGCCTGGTCATAGATTCCAACAATGCCAGCGGCTGAAATGTCTTTCCATGGATGAGGAAGTTTGCTTCTTTTGTGGGGAAATTGGACATTCCCTTGGAAAATGCGATGTGTCTCAAGCAGGGGGAGGAAGGTTTGCTAAGTGCTTACTCTGTTATGGACATGGACACTTCAGCTATAACTGTCCTCAAAATGGTCATGGAATTGATCCAAAGGTGCTTGCAGTCAATGGGGCTATCAATAGAACAGCAGTGGAAGCTCGAAGAGAGCTCTTGCCGAGGTTTAATATGTGA 3924 0.34 MVSQRQRLARKRYKAEHPELFPKPEPTPPKDPENKKKKKKNSAFKRKRPEPKPGSRKRHPLRVPGMKPGESCFICKAMDHIAKFCPEKAEWEKNKICLRCRRRGHRAKNCPEVLDGAKDAMYCYNCGENGHSLTQCPHPLQEGGTKFAECFVCNQRGHLSKNCPQNTHGIYPKGGCCKICGGVTHLAKDCPDKGKSGSVAANRPADGWMRIEERPMGQVTKFVSGDDIEDDFMTDDIHSGDKKKPAKSTEDHSEFSDAKKRREEDNPQTLVSLVRDSEKKKRKRKRKKKIEESNEQPQVEVCPKSLVDSVIPIVAQKENAETTTENSNPTPKKKKKKKNKNVQDAEQLLTCDPSIAIGAVPDVTKEGGSQQGDANGNGGLCPKPLLDTPIPIVPQEGNAKTSTQNPNPIPQKKKKKKNVQGAEQHLTCDPSILIDVEPDVTKEVGAQQISETAETTTHDPVPTPKKNKNKDVQVAQQQLHTCDPSIPTSAEPDVMKEEATKQGDADGNEGLCPKPLLDKPIPIFPQEENAETSRQNPNPTPRKKKKKNVEGAEQVQTCDPSILTGVEPDVMKEEGAQQGSDLPAETTRQIHAPTPKKNKKKDVQGAQQQLQTCDPSIMIGVEPNVMKEEGAQQGEANETAVFGINEECPGPDSMPLKDTLRKKKNVLKSQGAEPEPKSKESNNTHHPQQCYSDSELKMKMKKGAEANAENSAVCPKPKLALPSDIAIPNNSQVNKRAEPTEAKVEDQACSKPKLASPIDLPAPTNSEKKKEVEPVQNPDARAQPPQPQPCSAPCAEPPGDPATPIDQRRRKQKSKREKETIIICSEEVENQGSPLHMDITLNQAPDQVQQDQATPISLQPASLMDQTILVDPATPIDLELTMKKIKKKQRKKTTSTELPEISIQTSTCLIEASPIDPAIPMDPCLAISTGPEQEMSKKKKKRKSKLESEAAELNEHYKLPEAAPPEAPVQKSIYHTDAPSIDPVGPSPPVDTETPIDQGQQMTKKKRKKKKRIVIIIEGTETNEHGVKPPETLVQKFAYPTVTTSIDPTIPVPAPPIDQGQKMRKKMRKRSALISKGAEPDEHDDKPPGTPVQRSIHPIAEPSIDPTIPASQTPPVDPATPVDPEPMTKKKRKKKRNSAKNEGLESEKHNADRIAETPVQKTEGSTTENSMGRCNVEPAGKTLVQITDTLRVTKSPFKHHGESSLRCRACRQPGHRFQQCQRLKCLSMDEEVCFFCGEIGHSLGKCDVSQAGGGRFAKCLLCYGHGHFSYNCPQNGHGIDPKVLAVNGAINRTAVEARRELLPRFNM 1307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01488 1307 MobiDBLite consensus disorder prediction 1044 1175 - -
Gma20g01488 1307 MobiDBLite consensus disorder prediction 12 38 - -
Gma20g01488 1307 MobiDBLite consensus disorder prediction 235 277 - -
Gma20g01488 1307 SMART c2hcfinal6 71 87 IPR001878 GO:0003676|GO:0008270
Gma20g01488 1307 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Gma20g01488 1307 SMART c2hcfinal6 96 112 IPR001878 GO:0003676|GO:0008270
Gma20g01488 1307 SMART c2hcfinal6 149 165 IPR001878 GO:0003676|GO:0008270
Gma20g01488 1307 SMART c2hcfinal6 1258 1274 IPR001878 GO:0003676|GO:0008270
Gma20g01488 1307 SMART c2hcfinal6 176 192 IPR001878 GO:0003676|GO:0008270
Gma20g01488 1307 SMART c2hcfinal6 1206 1222 IPR001878 GO:0003676|GO:0008270
Gma20g01488 1307 SMART c2hcfinal6 1232 1248 IPR001878 GO:0003676|GO:0008270
Gma20g01488 1307 ProSiteProfiles Zinc finger CCHC-type profile. 97 112 IPR001878 GO:0003676|GO:0008270
Gma20g01488 1307 MobiDBLite consensus disorder prediction 443 617 - -
Gma20g01488 1307 MobiDBLite consensus disorder prediction 656 682 - -
Gma20g01488 1307 MobiDBLite consensus disorder prediction 230 430 - -
Gma20g01488 1307 Coils Coil 936 956 - -
Gma20g01488 1307 PANTHER OS04G0555800 PROTEIN 277 1300 - -
Gma20g01488 1307 PANTHER OS04G0555800 PROTEIN 1 259 - -
Gma20g01488 1307 MobiDBLite consensus disorder prediction 1138 1156 - -
Gma20g01488 1307 MobiDBLite consensus disorder prediction 445 460 - -
Gma20g01488 1307 ProSiteProfiles Zinc finger CCHC-type profile. 123 137 IPR001878 GO:0003676|GO:0008270
Gma20g01488 1307 MobiDBLite consensus disorder prediction 1108 1122 - -
Gma20g01488 1307 Gene3D - 66 118 - -
Gma20g01488 1307 MobiDBLite consensus disorder prediction 39 62 - -
Gma20g01488 1307 Gene3D - 1228 1279 - -
Gma20g01488 1307 Gene3D - 119 173 - -
Gma20g01488 1307 SUPERFAMILY Retrovirus zinc finger-like domains 116 167 IPR036875 GO:0003676|GO:0008270
Gma20g01488 1307 MobiDBLite consensus disorder prediction 395 409 - -
Gma20g01488 1307 MobiDBLite consensus disorder prediction 1159 1173 - -
Gma20g01488 1307 MobiDBLite consensus disorder prediction 1072 1090 - -
Gma20g01488 1307 SUPERFAMILY Retrovirus zinc finger-like domains 65 112 IPR036875 GO:0003676|GO:0008270
Gma20g01488 1307 MobiDBLite consensus disorder prediction 1 65 - -
Gma20g01488 1307 MobiDBLite consensus disorder prediction 469 485 - -
Gma20g01488 1307 MobiDBLite consensus disorder prediction 629 820 - -
Gma20g01488 1307 MobiDBLite consensus disorder prediction 928 1011 - -
Gma20g01488 1307 SUPERFAMILY Retrovirus zinc finger-like domains 1229 1276 IPR036875 GO:0003676|GO:0008270
Gma20g01488 1307 Pfam Zinc knuckle 150 165 IPR001878 GO:0003676|GO:0008270
Gma20g01488 1307 Pfam Zinc knuckle 122 138 IPR001878 GO:0003676|GO:0008270
Gma20g01488 1307 MobiDBLite consensus disorder prediction 803 820 - -
Gma20g01488 1307 MobiDBLite consensus disorder prediction 780 800 - -
Gma20g01488 1307 ProSiteProfiles Zinc finger CCHC-type profile. 150 165 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01488 Gma-Chr20 41981044 41991551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01488 96 193 C2H2 Transcription Factor Family AT5G20220 28.696 1.32e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01488 - - gmx:102669818 1973.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02231 10 49900586 49904689 Gma20g01488 20 41981044 41991551 GST