Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01481 ATGGGCAAAGCACCTTGTTGTGAGAAACATGGGGTCAGAAGGGGAGCTTGGACACCCGAAGAAGACCAAGCTTTGGTTGACTACATCCAGAAACATGGCCATGGAAGTTGGCGTTCACTCCCCAAACATGCAGGTCTCCTAAGATGTGGAAAAAGTTGTCGGCTTCGGTGGATAAACTATCTTCGCCCAGGCATCAAGCGTGGCCCATTTACTAGTGAAGAAGAAAGTACAATCGTTCAACTTCATGGCATGCTTGGCAACAGGTGGGCTTCTATAGCATCTCAACTACCTGGAAGAACAGACAATGAGATTAAGAACTTCTGGAACACCCATCTAAAGAAGCGTCTCCTTCGATCATGTCATTCCCAAAGAGCAAAACAGCTATGTGTGATTCCTGATCAATCCATTGTCAAGTCCGAATCTCCTTCGACGCGGCACATGGTACAGTGGGAGAGTGTGAGAGTTGAGACAGAGGCAAGGTTGTCATTGGAATCCACAATGCTCAATTCATGGCCAACGAGTAAAACATGCCCTGATCACTTTCTTCAACTTTGGCATTCAGAGGTTGGAAAATCATTTCGCATGATCAAGGGAAAGGAAGAAGGAGTAGTGAGTCAAAGCCTTATCTCACAACCTTCATCTTCATCAAAATTGGAGTCTTGTTCAGATGTGTCATTGCAGGTGAAAACCAACACTGGAACTAGTAGCTGCATTCCAAAGCTTGAGGATGTGAGCATGGTTCATGAACAAACAAGTAGCTACAAACCAAAGCTTGATGATGACACAGCTGGTTCTGACTCCGGCAATTATGAATTTCTTGATACTTCTGATTCTGCACTGAAGCACCTTCTACATATGCCTGATAGTGATATGGGATTCTTGGGACACAATGATCATTTCCAAAATCTCCTTGATGGTACATGTGACTAA 930 0.4441 MGKAPCCEKHGVRRGAWTPEEDQALVDYIQKHGHGSWRSLPKHAGLLRCGKSCRLRWINYLRPGIKRGPFTSEEESTIVQLHGMLGNRWASIASQLPGRTDNEIKNFWNTHLKKRLLRSCHSQRAKQLCVIPDQSIVKSESPSTRHMVQWESVRVETEARLSLESTMLNSWPTSKTCPDHFLQLWHSEVGKSFRMIKGKEEGVVSQSLISQPSSSSKLESCSDVSLQVKTNTGTSSCIPKLEDVSMVHEQTSSYKPKLDDDTAGSDSGNYEFLDTSDSALKHLLHMPDSDMGFLGHNDHFQNLLDGTCD 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01481 309 CDD SANT 69 112 IPR001005 -
Gma20g01481 309 Gene3D - 69 135 - -
Gma20g01481 309 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma20g01481 309 SMART sant 66 114 IPR001005 -
Gma20g01481 309 SMART sant 13 63 IPR001005 -
Gma20g01481 309 CDD SANT 16 61 IPR001005 -
Gma20g01481 309 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gma20g01481 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma20g01481 309 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma20g01481 309 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gma20g01481 309 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma20g01481 309 Gene3D - 14 66 - -
Gma20g01481 309 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 298 - -
Gma20g01481 309 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 298 - -
Gma20g01481 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01481 Gma-Chr20 41924514 41926754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01481 1 297 MYB Transcription Factor Family AT3G61250 50.329 4.70e-94 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma20g01481 Myb_DNA-binding 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01481 K09422 - gmx:100782075 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02239 10 49975008 49977473 Gma20g01481 20 41924514 41926754 GST