Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01468 ATGGCTCCGCCGCTCGAACACAACGGCGTTTCCACGAGCGGTGACTCTCAGAGATCCATTCCCACGCCGTTTCTCACCAAAACCTACCAGCTCGTCGACGATCACACCATCGACGATGTCATTTCGTGGAACGATTCTGGATCGTCCTTCATCGTCTGGAACACCACCGCTTTCGCCAAGGATTTGCTTCCTAAATATTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACTTATGGATTTAGAAAAGTTGTACCTGACCGCTGGGAGTTCTCGAACGAGTATTTTCGAAGAGGCGAAAAGCGTCTTCTCTGCGAAATCCAGCGACGGAAGATCCTCTCCGCATCTCCTCCGCCGGCGGGAGCAACTGCCACCGTGGCGGTTCCGTCGCCGCTGCCGCTATCTGCGATCCCGACGGCGAAGCCGATCGTGTCGCCGTCGAACTCCGCGGAGGAGCAGGTGCTTTCGTCGAACTCGTCGCCGGCGAGAGCACCGGTGGAGCTGTTGGACGAGAACGAGCGGCTGAGAAAGGAGAACATTCTGTTGACGAAGGAATTGGTGAAGATGAGATCGCTCTGCAACAATATATTCAATCTCATGTCGAATTACGCTAACGCTCAAGCGGACGGTAGTTCCGCGGCGGCGGCGAAGCGGTGCTCCGGCGAGGATGCGGTGGAGGAGATGAATCCGAAGCTGTTTGGGGTGGCGATTGGTAAGAAGCGAGCGAGAGAGGAGGAAGGACATGGAGCGAAGTATGATACGGCTTTGAGTCTGCATCAGCCGTTTCATGCGGACGTGAAATCTGAAGCGTTGGATTTACCAGGACGTGGCGAAAATAAAAAAACGCCGTGGCTAAATCAATGTCATAGAGCAAATCAGAGGGTGTGTAATTGA 903 0.5404 MAPPLEHNGVSTSGDSQRSIPTPFLTKTYQLVDDHTIDDVISWNDSGSSFIVWNTTAFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNEYFRRGEKRLLCEIQRRKILSASPPPAGATATVAVPSPLPLSAIPTAKPIVSPSNSAEEQVLSSNSSPARAPVELLDENERLRKENILLTKELVKMRSLCNNIFNLMSNYANAQADGSSAAAAKRCSGEDAVEEMNPKLFGVAIGKKRAREEEGHGAKYDTALSLHQPFHADVKSEALDLPGRGENKKTPWLNQCHRANQRVCN 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01468 300 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma20g01468 300 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma20g01468 300 SUPERFAMILY "Winged helix" DNA-binding domain 21 113 IPR036390 -
Gma20g01468 300 Gene3D - 16 114 IPR036388 -
Gma20g01468 300 MobiDBLite consensus disorder prediction 1 21 - -
Gma20g01468 300 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 218 284 - -
Gma20g01468 300 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 11 216 - -
Gma20g01468 300 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma20g01468 300 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 218 284 IPR027725 -
Gma20g01468 300 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 216 IPR027725 -
Gma20g01468 300 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma20g01468 300 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma20g01468 300 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01468 Gma-Chr20 41839727 41840714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01468 2 300 HSF AT5G62020 49.695 4.06e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gma20g01468 HSF_DNA-bind 1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01468 K09419 - gmx:100780987 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02251 10 50052063 50053362 Gma20g01468 20 41839727 41840714 GST
Gma16g01606 16 36911117 36913020 Gma20g01468 20 41839727 41840714 PCT
Gma09g01378 09 37203141 37204726 Gma20g01468 20 41839727 41840714 PCT
Gma20g01468 20 41839727 41840714 Gma16g01606 16 36911117 36913020 PCT
Gma20g01468 20 41839727 41840714 Gma09g01378 09 37203141 37204726 PCT