LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma20g01460	ATGGCGAATGCTGATTCTTCTTCTTCTTCCCGCTACCGCAGCGTTTTGAACTTAAGAAGAAAAGCACACATATACGCACTCGTTGTCCTTCTCTGCATCACCTCCTACCTCCTCGCCGTCTTTCACCGAGGATCGCGCCTCACCACCGCCCTCTCCCTCTCCGCACCGTGCAACCACTTCAGCGCCGAGTCTTCTAAAACCTTCCCTCGGTGCAGCGCCAACTTCAGCGAGTACACGCCGTGCCATGACCCGCAAAGGTCCCTGAGGTACAAACGTAGCAGAAAGATATACAAAGAAAGGCACTGTCCCGAAGAGCCCTTGAAGTGTAGGGTACCTGCCCCCCACGGCTACCGGAACCCCTTCCCCTGGCCGGCGAGTAGAGACCGCGCGTGGTTCGCTAACGTCCCCCACCGTGAGCTCACCGTGGAGAAGGCCGTGCAGAACTGGATACGCTCCGACGGCGACCGCTTCGTCTTCCCCGGCGGCGGAACCACCTTCCCCAACGGCGCTGACGCCTACATTGAGGATATCGGAATGTTGATTAATCTTAAAGATGGCTCTATTCGGACTGCTCTCGATACTGGCTGTGGGGTTGCTAGTTGGGGAGCCTATCTTCTATCACGCAATATCCTAACATTGTCAATTGCTCCAAGGGATACCCACGAAGCACAAGTTCAATTTGCTCTTGAGCGAGGTGTTCCTGCATTCATTGGAATCCTAGCCACCAAGAGGCTTCCTTTCCCTTCCAGGGCTTTTGACATCTCCCATTGCTCTCGCTGCCTCATCCCATGGGCTGAATATGATGGGATTTTTCTTAACGAAGTGGATCGATTTCTACGCCCTGGTGGGTATTGGATTCTATCTGGGCCACCAATCAATTGGAAGAAATACTGGAAAGGGTGGCAGAGAAAAAAGGAGGAACTGAACGAAGAGCAGACCAAAATTGAGAAGGTAGCCAAAAGCCTTTGTTGGAACAAGCTAGTCGAGAAGGACGATATTGCCATCTGGCAGAAACCAAAAAACCATTTAGATTGCAAGGCCAATCATAAACTCACCCAAAACAGATCATTCTGCAATGCACAAAATGACCCTGACAAGGCCTGGTACACCAATATGCAAACATGTCTGAGTCCTGTTCCTGTAGTGTCTAGCAAAGAAGAAACTGCTGGTGGGGTAGTGGACAATTGGCCAAAGAGATTAAAATCCATCCCACCAAGGATTTATAAGGGTACCATAGAAGGGGTTACAGCCGAAACTTATTCAAAAAATTATGAGCTGTGGAAGAAAAGGGTATCACATTATAAGACAGTGAACAATCTACTAGGAACTGAGAGATACCGCAATCTTTTGGATATGAATGCCTACTTGGGTggatttgccgctgcactaattgaggaccctgtttgggtcatgaacgtggttcctgttcaggctaaggttaacacacttggagccatatatgaacgaggcttgattggaatatatcatgaCTGGTGTGAAGCAATGTCTACTTATCCTAGAACTTATGATCTAATTCATGCTGATTCAGTGTTCAGCCTTTACAGTAACAGATGTGAATTGGAAGACATTCTGCTAGAAATGGATAGGATTCTTAGACCTGAAGGATGTGTTATCATCCGAGATGATGCTGACATATTGGTAAAAGTAAAGAGCATCGTCAATGGATTGGAATGGGATAGTATAATTGTAGACCATGAAGATGGGCCTCTTCAAAGGGAGAAACTTCTATTTGCTATGAAGAACTACCGGTTTTTAATAATGGATGGGGATCAAAATGAGTTTGGTTCTGTGCATGAAGGGAATGTTGATATTGGACCTCAGACGTCGAATAACTTGGAGTTGAATGTGGAGCAGAACTGTTGCAGCCCAAATGTTGCTCGTGCTAGTGACTCTCAATCCTGTCCTCCTGCAGCAAATGTACTTAGCTGCGATACTGTGTTGGGAATTGGTACGGAATTTGAGTCCAATGATCATGCATACAGATTCTATAACAAGTATGCCAGATTGTTGGGTTTCAATGTTAGAAAAGATTGGATAAATAGGAGTAAGGTGCATGGTCAGGTGGTGTCTAGGAAGTTTACCTGCTCCCAAGAGGGATGGAAAGACAAAAGAGATGCTAATGTGAAGAAACATCGGAAGGAAACAAGATCTGGCTGCTTGGCACATATGATCGTCAATCGGCAACCAGATGGTAAATACCAGGTCACCCTTTTGAATCACAACATAATCATGACAATATAA	2262	0.4408	MANADSSSSSRYRSVLNLRRKAHIYALVVLLCITSYLLAVFHRGSRLTTALSLSAPCNHFSAESSKTFPRCSANFSEYTPCHDPQRSLRYKRSRKIYKERHCPEEPLKCRVPAPHGYRNPFPWPASRDRAWFANVPHRELTVEKAVQNWIRSDGDRFVFPGGGTTFPNGADAYIEDIGMLINLKDGSIRTALDTGCGVASWGAYLLSRNILTLSIAPRDTHEAQVQFALERGVPAFIGILATKRLPFPSRAFDISHCSRCLIPWAEYDGIFLNEVDRFLRPGGYWILSGPPINWKKYWKGWQRKKEELNEEQTKIEKVAKSLCWNKLVEKDDIAIWQKPKNHLDCKANHKLTQNRSFCNAQNDPDKAWYTNMQTCLSPVPVVSSKEETAGGVVDNWPKRLKSIPPRIYKGTIEGVTAETYSKNYELWKKRVSHYKTVNNLLGTERYRNLLDMNAYLGGFAAALIEDPVWVMNVVPVQAKVNTLGAIYERGLIGIYHDWCEAMSTYPRTYDLIHADSVFSLYSNRCELEDILLEMDRILRPEGCVIIRDDADILVKVKSIVNGLEWDSIIVDHEDGPLQREKLLFAMKNYRFLIMDGDQNEFGSVHEGNVDIGPQTSNNLELNVEQNCCSPNVARASDSQSCPPAANVLSCDTVLGIGTEFESNDHAYRFYNKYARLLGFNVRKDWINRSKVHGQVVSRKFTCSQEGWKDKRDANVKKHRKETRSGCLAHMIVNRQPDGKYQVTLLNHNIIMTI	753

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma20g01460	753	Gene3D	Vaccinia Virus protein VP39	171	361	IPR029063	-
	Gma20g01460	753	Pfam	FAR1 DNA-binding domain	668	746	IPR004330	-
	Gma20g01460	753	PANTHER	SAM-DEPENDENT METHYLTRANSFERASE	15	589	IPR004159	GO:0008168
	Gma20g01460	753	PANTHER	METHYLTRANSFERASE PMT20-RELATED	15	589	-	-
	Gma20g01460	753	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	98	304	IPR029063	-
	Gma20g01460	753	Pfam	Putative S-adenosyl-L-methionine-dependent methyltransferase	77	587	IPR004159	GO:0008168
	Gma20g01460	753	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	420	550	IPR029063	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma20g01460	Gma-Chr20	41733338	41739990	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Gma20g01460		Methyltransf_29	5.8e-226	CL0063

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma20g01460	-		-	gmx:100778314	1220.68