Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01453 ATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGTCAGAGCTGGAGCGGCTTTTTAGACGATATGGGAAGGTTGATAGGGTGGATATGAAGTCTGGTTTTGCTTTTATCTATATGGAAGACGAGAGAGATGCTGAGGCTGCTATTCGTGCTCTTGATCGAGTAGAATTTGGTCGGAAGGGACGCAGACTCCGTGTGGAATGGACAAAGCATGAACGTGGTGTTAGAAAGCCTGCTAGTTCAAGAAGATCTTCAGCTAATGGGAGGCCATCAAAGACCTTGTTTGTAATTAATTTTGATACATACCATACCAGAACAAGGGACTTGGAGAGGCACTTTGAACCATATGGAAAGATAGTTAGTGTGAGGATCAGAAGGAATTTTGCTTTTGTTCAATATGAATCAGAGGATGATGCTAGCAGAGCACTGGAAGCTACAAATATGAGCAAGTTACTGGATCGAGTTATTTCTGTTGAATTTGCTGTTAAAGATGATGATGATAGGAGAAATGGATATAGCCCTGAGAGAGGCCGTGATCGTCACCGTGATAGAAGCCGTGATGGAAGGCGATCTCCTAGTCCTTATCGTAGAGAAAGGGGTAGTCCTGATTATGGCCGTGGGCCCAGTCCATATCAGAGAGAGAGGGGCAGCCCTGACTATGGCCGTGACCGTGACCGTAGCCGTAGCAGAAGCCCCCCTAGGAGGGAGAGAGCTAGCCCTGCTTATGGGCGTAGAAGCCTTAGTCCACATAGAAGAGAAAGGGAGGGTTCTGAACCTGTTCGTGACTCCAGCCGCAGTCCTTATCACAAAGAGCGAGGGAGAACTGACCATGGTATTTCTCCTTCTCAGAGTCCAGAAGGAAGAGGGAAGAAAAGCCCCCAAAATGGTCATGGTTCTAGCCGTAGTCCTCATGATACTGGGAAGACTAGCCCTGAAAATGGACTTGGCTCCGGAAGTCCTGATGAAAAAGGGAATCCCAGCCCTTACAATGGTTATGGAGGGAGCCCAAATAATATGCCTGATCCCAGGGACAGTCCCAACTATGGCGGTCCTGAAAGTCCCATGCATGAAAGATACCGCAGCCAGTCACCCCCTGCAGAAGAATGA 1116 0.4785 MRPIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDERDAEAAIRALDRVEFGRKGRRLRVEWTKHERGVRKPASSRRSSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRNGYSPERGRDRHRDRSRDGRRSPSPYRRERGSPDYGRGPSPYQRERGSPDYGRDRDRSRSRSPPRRERASPAYGRRSLSPHRREREGSEPVRDSSRSPYHKERGRTDHGISPSQSPEGRGKKSPQNGHGSSRSPHDTGKTSPENGLGSGSPDEKGNPSPYNGYGGSPNNMPDPRDSPNYGGPESPMHERYRSQSPPAEE 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01453 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Gma20g01453 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Gma20g01453 371 MobiDBLite consensus disorder prediction 281 319 - -
Gma20g01453 371 MobiDBLite consensus disorder prediction 168 206 - -
Gma20g01453 371 MobiDBLite consensus disorder prediction 168 371 - -
Gma20g01453 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Gma20g01453 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Gma20g01453 371 CDD RRM2_AtRSp31_like 96 165 - -
Gma20g01453 371 SUPERFAMILY RNA-binding domain, RBD 83 172 IPR035979 GO:0003676
Gma20g01453 371 Gene3D - 87 176 IPR012677 -
Gma20g01453 371 Gene3D - 1 86 IPR012677 -
Gma20g01453 371 MobiDBLite consensus disorder prediction 219 280 - -
Gma20g01453 371 CDD RRM1_AtRSp31_like 2 73 - -
Gma20g01453 371 SMART rrm1_1 96 162 IPR000504 GO:0003723
Gma20g01453 371 SMART rrm1_1 3 70 IPR000504 GO:0003723
Gma20g01453 371 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 211 - -
Gma20g01453 371 PANTHER - 4 211 - -
Gma20g01453 371 SUPERFAMILY RNA-binding domain, RBD 4 91 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01453 Gma-Chr20 41666507 41669580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01453 94 174 Eukaryotic Initiation Factors Gene Family AT1G49760 32.584 8.36e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01453 K12893 - gmx:100781534 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01453 20 41666507 41669580 Gma20g01453 20 41666507 41669580 ECH