Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01450 ATGTTTTCCATCAATCATTTCTCCGACCCAGATGCCACCTCGCCGGGGTCGGGAGGAAGCTCCCGACCGGCGCTGTCGGACGAGGATTTTTTTCTGGCGGCAAGCAATCCCAAGAAACGCGCCGGGAGGAAGAAGTTCCGGGAGACGCGCcacccggtgtaccgcggcgtgagaaggcgggactccggcaagtgggtgtgcgaggtgcgcgagcccaacaagaagtccaggatttggctcgggacctttcccacggcggagatggcggcgcgtgcgcatgacgtggcggcgatcgcgctgaggggaaggtcagcctgcctcaacttcgccgactccgcgtctcggctcccggtgccggcgacggcggaggccagggacattcagaaggctgcggcggaggccgcAGAGGCGTTTCGCCCTGGGAAGAATGATGATGCGGTGGCGGAGAGGGTGGCAGCGACGGCGACGGAGCGTGAAGAAGAACAAGAAGAAGGGATGGTGCCGGAGTATCTGAGGAACATGGTGCTCATGTCGCCGACGCATTGCTTCGGGAGTGATGAGTATGGAAGTGCTGACGTGGAATTTGACGATGCTGAAGTTTCTCTGTGGAGTTACTCCATTTAA 624 0.3333 MFSINHFSDPDATSPGSGGSSRPALSDEDFFLAASNPKKRAGRKKFRETRHPVYRGVRRRDSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSASRLPVPATAEARDIQKAAAEAAEAFRPGKNDDAVAERVAATATEREEEQEEGMVPEYLRNMVLMSPTHCFGSDEYGSADVEFDDAEVSLWSYSI 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01450 207 Pfam AP2 domain 52 102 IPR001471 GO:0003700|GO:0006355
Gma20g01450 207 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Gma20g01450 207 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 13 207 - -
Gma20g01450 207 MobiDBLite consensus disorder prediction 1 25 - -
Gma20g01450 207 CDD AP2 54 112 IPR001471 GO:0003700|GO:0006355
Gma20g01450 207 MobiDBLite consensus disorder prediction 1 21 - -
Gma20g01450 207 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 207 IPR045277 GO:0003700
Gma20g01450 207 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Gma20g01450 207 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Gma20g01450 207 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Gma20g01450 207 SUPERFAMILY DNA-binding domain 53 112 IPR016177 GO:0003677
Gma20g01450 207 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01450 Gma-Chr20 41629902 41631058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01450 32 205 AP2-EREBP Transcription Factor Family AT5G51990 55.330 1.45e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma20g01450 AP2 1.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01450 - K09286 gmx:100101894 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02266 10 50254896 50255869 Gma20g01450 20 41629902 41631058 GST
Gma16g01625 16 37197625 37198766 Gma20g01450 20 41629902 41631058 PCT
Gma09g01413 09 38194831 38196070 Gma20g01450 20 41629902 41631058 PCT
Gma20g01450 20 41629902 41631058 Gma16g01625 16 37197625 37198766 PCT
Gma20g01450 20 41629902 41631058 Gma09g01413 09 38194831 38196070 PCT