Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01440 ATGGCGAGGGGAAAGGTTCAACTGAAGAAGATTGAGGATACAACAAGCCGTCAAGTGGCGTTTTCAAAGCGTCGAAGTGGTCTTCTAAAGAAAGCTTACGAGTTATCCGTTCTTTGTGATGCAGAAGTGGCTGTGATAGTCTTCTCACAGAACGGAAGGCTCTATGAGTTCTCAAGTTCTGACATGACGAAGATTTTGGAACGATACCGAGAATATACCAAAGATGTTCCTGGCAGTAAGTTTGGAGACGATTATATTCAGCAACTGAAGTTAGACTCCGTAAGCATGACAAAGAAGATTGAGCTTCTTGAACATTCTAAAAGGAAGCTGCTGGGACAAAGCGTGAGTTCTTGCTCTTTTGATGAACTCAAAGGAATTGAGGAGCAGCTGCGGACAAGTTTGCAAAGAGTCAGGCAGAGAAAAACTCAACTATATACGGAACAGATTGATCGACTACGATCTCAGGAGAGTAACTTGCTCAAAGAGAATGCTAAATTAAGTGCAATGTATCAGAGGGCGGAAAGGTCATCCCGGCAGCAATGGCCTAGACACACACAAGCAGAAGCAGAACCCCACTGTTCAAGTAGCCAGAGTTTAGATGTGGATACAGAACTATTTATTGGACTTCCGAAGCAGCAGTGCTGA 645 0.4388 MARGKVQLKKIEDTTSRQVAFSKRRSGLLKKAYELSVLCDAEVAVIVFSQNGRLYEFSSSDMTKILERYREYTKDVPGSKFGDDYIQQLKLDSVSMTKKIELLEHSKRKLLGQSVSSCSFDELKGIEEQLRTSLQRVRQRKTQLYTEQIDRLRSQESNLLKENAKLSAMYQRAERSSRQQWPRHTQAEAEPHCSSSQSLDVDTELFIGLPKQQC 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01440 214 MobiDBLite consensus disorder prediction 174 196 - -
Gma20g01440 214 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma20g01440 214 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma20g01440 214 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma20g01440 214 PANTHER MADS BOX PROTEIN 1 210 - -
Gma20g01440 214 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Gma20g01440 214 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma20g01440 214 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Gma20g01440 214 PANTHER MADS-BOX PROTEIN SOC1 1 210 - -
Gma20g01440 214 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma20g01440 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma20g01440 214 Coils Coil 149 169 - -
Gma20g01440 214 Pfam K-box region 87 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma20g01440 214 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Gma20g01440 214 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01440 Gma-Chr20 41551417 41564033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01440 1 144 MADS-box Gene Family AT5G62165 62.069 5.31e-59 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma20g01440 K-box 1.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01440 - - gmx:100800580 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01440 20 41551417 41564033 Gma20g01440 20 41551417 41564033 ECH