Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01436 ATGGGAAGAGGTAAGGTGGTTCTGGAGAGAATACAGAATAAGATCAATCGCCAAGTAACCTTCTCAAAGCGCAGAAATGGTTTGCTGAAGAAAGCCTTCGAGCTATCTGTGCTATGCGATGCTGAAATCGCTCTTATCATCTTCTCCAGCCGTGGCAAGCTTTTTCAATACAGTAGCACTGACATTAACAGAATCATTGATAAGTATCGTCAATGCTGCTTCAACATGTCTCAGACTGGCGACGTAACTGAACATCAATCGGAGCAGTGCTTATACCAGGAGCTTTTGATATTAAGAGTCAAGCATGAATCACTCCAGCGGACTCAAAGGAATCTTCTGGGAGAAGAACTAGAGCCACTTAGCATGAAAGAATTGCATAGTTTAGAGAAACAGCTGGATAGAACGCTTGGACAAGCTCGGAAGCACCTAACGCAGAAGCTGATATCACGAATTGACGAATTACATGGAAAGGAAAGAGGTAAATGCACCCAGACTTGTGAAGGTTCTGCTAATAGTCATATTCGACTGCAAGATGCACAAGTCAATCAATTTGAATCTGAAACAACAGGTTCGTTTCGGCTTCAGCAAGAGCAGACTACTGCTTCAAAAGGAAAAGAAAGCAGTCACAATATAAATATATTGCGTCTTTGA 651 0.4209 MGRGKVVLERIQNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALIIFSSRGKLFQYSSTDINRIIDKYRQCCFNMSQTGDVTEHQSEQCLYQELLILRVKHESLQRTQRNLLGEELEPLSMKELHSLEKQLDRTLGQARKHLTQKLISRIDELHGKERGKCTQTCEGSANSHIRLQDAQVNQFESETTGSFRLQQEQTTASKGKESSHNINILRL 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01436 216 PANTHER MADS BOX PROTEIN 1 215 - -
Gma20g01436 216 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma20g01436 216 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma20g01436 216 MobiDBLite consensus disorder prediction 187 211 - -
Gma20g01436 216 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 215 - -
Gma20g01436 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma20g01436 216 ProSiteProfiles K-box domain profile. 88 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma20g01436 216 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma20g01436 216 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Gma20g01436 216 Pfam K-box region 83 159 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma20g01436 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma20g01436 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma20g01436 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma20g01436 216 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Gma20g01436 216 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01436 Gma-Chr20 41508672 41515153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01436 1 157 MADS-box Gene Family AT1G24260 54.658 1.03e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma20g01436 K-box 1.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01436 K09264 - gmx:100778860 416.772