Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01430 ATGGCTCAAGAGAATCAACATATAATATTGGTTACATCGGACAATGATGAGAGGAAGATCATTCGTAGGGAAGTTGAAAAACAAAGGAGGACAAACATGTCTATTCTATGTGCATCTCTCCGCTCTTCACTCCCTTTTGAACTCATCAAGGGAAAGCGTTCGGCATCAGATCACATAGGCGAGGCTGTAAATTATATCCAAATTTTGAAGCAAAAGATTAATGCTCTCCAAGTCAAGAGAGATAGGCTCAAACTAATGGTTAATTCAAGTTTATTGGAAACTAGTATCGATCAACCAGAACATTCAGGTGCAGTAGTGAAGTGTGTCAACATCAATCTCATTCCAGGGGGAGTGGAAATTGCCATATGTAGTAGTGGCTTAGAGGAGGGTAGTAATTCACCTTTATCAGAGTTCATGGAAATATTGCTTCAAGAAGGATGTGATGTTGTTAGCTGTGTTTCCACTCTTGCTAATGGAAGGATATTTCATGCCATTAAGTGCGAGGTGGAGGCGGACTTGACACGCCTTGATCTTGCTAAGCTACAACACAAACTGGATCATGCAATCTTGTTGCCAAGGTAA 582 0.4072 MAQENQHIILVTSDNDERKIIRREVEKQRRTNMSILCASLRSSLPFELIKGKRSASDHIGEAVNYIQILKQKINALQVKRDRLKLMVNSSLLETSIDQPEHSGAVVKCVNINLIPGGVEIAICSSGLEEGSNSPLSEFMEILLQEGCDVVSCVSTLANGRIFHAIKCEVEADLTRLDLAKLQHKLDHAILLPR 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01430 193 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 17 69 IPR011598 GO:0046983
Gma20g01430 193 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 14 87 IPR036638 GO:0046983
Gma20g01430 193 CDD bHLH_AtORG2_like 18 84 - -
Gma20g01430 193 Coils Coil 66 86 - -
Gma20g01430 193 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 4 192 IPR015660 GO:0003700|GO:0006357
Gma20g01430 193 Pfam Helix-loop-helix DNA-binding domain 21 69 IPR011598 GO:0046983
Gma20g01430 193 Gene3D - 10 101 IPR036638 GO:0046983
Gma20g01430 193 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 4 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01430 Gma-Chr20 41420525 41422065 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01430 12 185 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 36.723 1.07e-28 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma20g01430 HLH 2.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01430 - - gmx:100776724 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01430 20 41420525 41422065 Gma20g01430 20 41420525 41422065 ECH
Gma10g02285 10 50457781 50459564 Gma20g01430 20 41420525 41422065 GST
Gma16g01647 16 37460537 37461667 Gma20g01430 20 41420525 41422065 PCT
Gma09g01439 09 38734399 38736309 Gma20g01430 20 41420525 41422065 PCT
Gma20g01430 20 41420525 41422065 Gma16g01647 16 37460537 37461667 PCT
Gma20g01430 20 41420525 41422065 Gma09g01439 09 38734399 38736309 PCT