Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01428 ATGCCATCTCGACAACTGCCCACGTCTGCACCACCTCCCAACCACCGCGTCTCAACCCCTCTCTTCGCTTTCACCGCCTCCGTCTGCTCTTTATTCTTTCTACTCCTCCTCTGCCTCCGGAAGCGTAAACGAACAACTCCATCCTCCAACCCCCCTCACCCGTTCTCCTACCCCGTCCTCCGCCGCGCCACGAACTCGTTCTCGACGCGCCTCGGCCACGGCGGCTTCGGCCCCGTCTTCTCCGGCACCCTCGCCGGCGACCCCGTCGCCGTCAAGCTCATGGACTCCGCCTCCCTCCAGGGCGAGCGCGAGTTCCACAACGAGCTCTTGTTCGCGTCCAGACTCCGCTCCCCTTTAGTGGTCCCCGCCATCGGATTCTCCTCCGACCCAAAACGACGCCGTTTCCTCCTCGTCTATCACCTCATGCACAACGGCAACCTCCACGACGCCCTCTTGCGCCGCAAAACCCCCCACCTCACGCTCTGGAAAAACCGCTTCTCCATAATCCTCGACGTCGCAAAAGGAATCCACTACCTCCACTCCCTCGAACCCCCCATAATCCACGGCGACATAAAACCTAGTAACATTCTTCTCGACAATTCCTTCTCAGCAAAACTAGCAGACTTTGGCCTCGCGCGCTTAAAATCGGAGATAGAAGAATTCAAACTAAAACGCGAGGAAAAGAAAAAGGAAGAGTCGGAGAGCGATGCTGGTTCCGAATTAGAAACTCAGAGCGTCAACACCGAACAGTCATTTGATGATACTGGCAGAGAGAACGCTGCCTCGGATTATGTGATGGATTGGATTGGGAAGGAGGTGAGAAAAGAAAGGCCGAACGAGGTGAAGAAGAATGGTTCTTCTTCTGCTGCTGCTACTGCAGCATCGAGTAGTGGAACGGTGGAGAAGAAAAGTAGGAAGAAATTGGAATGGTGGGAATCCATGGACGATAGTGGGGTTTTGAAGAAGGAGAAGAGGAGACCAGCAAGGGAGTGGTGGAAGGAAGAGTATTCCGAAGAGCTTGCAAGgaagaaaaagaaaaagaagaagaagaagaagaagaGAAAGGGTAACGATGATGATGATAATAATAATTCGGAGGTAGATGATGTAAATGTGAATGTTTACAAGAGGGAGAAGAACAGGAGTAGGAACAGTCGGGGTAGTGTAGATTCATGGTTCAGCGGTGAGCTGAGAGGAATTCGATGGAATAGTTATGATTCCGGGACAGGGAGTGGAGCAAAGAGTGGGGGTGTGAGTAGCACTCCGAGCATGAGGGGAACGGTTTTCTACGTTGCTCCAGAGTATGGCTACAATGGGGATGCGTCTGAGAAGTGTGACGTGTACAGCTTCGGGGTATTGTTGCTAGTGATTGTTTCGGGGAGGAGGCCGCTTGAGGTGACGGGTTCGCCGGTATCGGAGTTTCAGCGTGCGAATCTGGTGTCTTGGGCGAGGCAATGCGCGCGGAGAGGGAAGCTTCTGGAAATGGTGGATGAGAGTGTGGAAGGGATGGATAAAGAGCAGGCTAGTATGTGTGTAACGGTTGCGCTAATGTGCTTGCTAAAGTCACCTGCTCGTCGTCCTTCCATGAAGGAGGTTGTGGGAATGCTCAGTGGGGAGATGGAGCCGCCGCTGTTGCCGCCTGAGTACTCGCAACAGGCCAAGTTCACGTTCAAGTCGCGGTGA 1683 0.5282 MPSRQLPTSAPPPNHRVSTPLFAFTASVCSLFFLLLLCLRKRKRTTPSSNPPHPFSYPVLRRATNSFSTRLGHGGFGPVFSGTLAGDPVAVKLMDSASLQGEREFHNELLFASRLRSPLVVPAIGFSSDPKRRRFLLVYHLMHNGNLHDALLRRKTPHLTLWKNRFSIILDVAKGIHYLHSLEPPIIHGDIKPSNILLDNSFSAKLADFGLARLKSEIEEFKLKREEKKKEESESDAGSELETQSVNTEQSFDDTGRENAASDYVMDWIGKEVRKERPNEVKKNGSSSAAATAASSSGTVEKKSRKKLEWWESMDDSGVLKKEKRRPAREWWKEEYSEELARKKKKKKKKKKKRKGNDDDDNNNSEVDDVNVNVYKREKNRSRNSRGSVDSWFSGELRGIRWNSYDSGTGSGAKSGGVSSTPSMRGTVFYVAPEYGYNGDASEKCDVYSFGVLLLVIVSGRRPLEVTGSPVSEFQRANLVSWARQCARRGKLLEMVDESVEGMDKEQASMCVTVALMCLLKSPARRPSMKEVVGMLSGEMEPPLLPPEYSQQAKFTFKSR 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01428 560 ProSiteProfiles Protein kinase domain profile. 65 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01428 560 PANTHER OS07G0586332 PROTEIN 1 560 IPR044576 -
Gma20g01428 560 Pfam Protein tyrosine and serine/threonine kinase 67 224 IPR001245 GO:0004672|GO:0006468
Gma20g01428 560 Gene3D Transferase(Phosphotransferase) domain 1 405 544 - -
Gma20g01428 560 PANTHER RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 1 560 - -
Gma20g01428 560 Coils Coil 333 353 - -
Gma20g01428 560 MobiDBLite consensus disorder prediction 283 299 - -
Gma20g01428 560 SMART serkin_6 65 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01428 560 MobiDBLite consensus disorder prediction 275 305 - -
Gma20g01428 560 MobiDBLite consensus disorder prediction 239 257 - -
Gma20g01428 560 MobiDBLite consensus disorder prediction 342 388 - -
Gma20g01428 560 Coils Coil 211 234 - -
Gma20g01428 560 Pfam Protein kinase domain 419 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01428 560 MobiDBLite consensus disorder prediction 224 257 - -
Gma20g01428 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Gma20g01428 560 MobiDBLite consensus disorder prediction 371 385 - -
Gma20g01428 560 SUPERFAMILY Protein kinase-like (PK-like) 49 549 IPR011009 -
Gma20g01428 560 Gene3D Transferase(Phosphotransferase) domain 1 52 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01428 Gma-Chr20 41395264 41397441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01428 414 533 Receptor kinase-like Gene Family AT3G58690 39.200 5.55e-15 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Gma20g01428 PK_Tyr_Ser-Thr 7e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01428 - - gmx:100814336 936.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02286 10 50464340 50466344 Gma20g01428 20 41395264 41397441 GST
Gma16g01648 16 37466776 37469891 Gma20g01428 20 41395264 41397441 PCT
Gma09g01440 09 38741556 38744521 Gma20g01428 20 41395264 41397441 PCT
Gma20g01428 20 41395264 41397441 Gma16g01648 16 37466776 37469891 PCT
Gma20g01428 20 41395264 41397441 Gma09g01440 09 38741556 38744521 PCT