Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01423 ATGCCTTCGCTCTCTCTCTCTGACCCTGACACCCCCAAACCTATTGCCAAGAAGAAAACCAAAACCCAGTCCCTCACCGATCCCGACCTCGATGGGGTTTCGGGGAAGAAGACGAAGAAGCGCAAGGCTTCAGATTTAGAACAAGAGGCCATGCCCCCCGCCGCTTACAACAACGATGGGGACGACGAGACCAGCTCCGACCTCGTCCAACCCGAACCTGCTTCCAGAGAAGACGACAACAAGAATAAGAAGAAAAAGAAGAAAAAGGTTGTTAAGTCCGAAGAAAAGGAACAGCCTTTGGTCACGGAGGCTAATGGAGAAAAGAAGGAGGATCCCAACGCGCTTTCCAACTTCAGGATTTCGGAACCCTTGAGGCAAAAATTGAAGGAGAAGGGTATCGAATCACTGTTTCCCATTCAGGCCATGACCTTCGACACCGTTCTCGATGGTTCTGATTTGGTCGGTCGGGCTCGCACCGGTCAGGGTAAAACTCTGGCATTTGTGTTGCCCATATTAGAGTCTTTAATAAATGGTCCAACAAAAGCTTCAAGAAAGACTGGCTTCGGGAGGACTCCAAGTGTTCTTGTGCTTCTACCTACTAGGGAATTGGCCTGTCAGGTGCATGCTGATTTTGATGTTTATGGTGGGGCAATGGGATTGAGTTCATGTTGTTTATATGGCGGAGCTCCGTATCAAGGTCAGGAAATTAAGCTTAGGAGAGGTGTTGATATTGTCATTGGCACACCAGGTCGTGTGAAGGATCATATCGAGAAAGGGAATATTGACCTGAGCCAACTAAAGTTTCGTGTCCTTGACGAAGCCGATGAAATGCTGAGGATGGGTTTTGTTGAAGATGTTGAAATGATTCTAGGCAAGGTAGAAAATGTTAATAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGACTGGGTTAAGCAAATTGCTGCAAGATTTTTGAAGCCAGATAAGAAAACTGCTGACCTTGTTGGAAATACAAAAATGAAGGCCAGCATCAATGTTAGGCATATTGTTCTTCCTTGTACTAGTTCTGCCAGGGCCCAACTTATCCCAGATATTATTCGCTGTTATAGCAGTGGAGGCCGGACAATTGTTTTTACCGAGACAAAAGAATCTGCTTCTCAGCTTGCAGGGATCTTGACTGGAGCAAAAGCTCTCCATGGTGACATACAGCAATCAACACGTGAGGTTACACTGTCTGGCTTTAGGTCTGGGAAATTCATGACATTAGTTGCCACAAATGTGGCAGCTCGAGGTCTTGATATTAATGATGTTCAGTTAATTATACAGTGTGAACCCCCACGGGATGTAGAAGCCTATATCCATCGTTCTGGACGCACAGGAAGAGCAGGTAATACTGGGGTTGCTGTTATGCTTTATGACCCAAAAAGATCGAACATATCTAGAATAGAGAGAGAGTCTGGTGTAAAATTTGAACACGTATCTGCTCCTCAGCCTGATGATATTGCCAAAGCCGTTAGTGGGGAAGCTGCTGAAATGATTATCCAAGTGTCTGATAGTGTGGTTCCTGCATTCAAGTCTGCTGCTGAAGATCTTTTGAACAATTCTGGTTTACCAGTCATTGAATTACTGGCAAAGGCTCTTGCAAAGGCTGTTGGTTATACTGAAGTAAAGCAAAGATCACTTCTAACTTCCATGGAGAACTATGTTACATTACTTCTTGAGACTGGCAAACCAATCTACACCCAATCTTTTGCCTATGGAGTCTTGAGGAGATTTTTGCCTGAAGAGAAGGTTGAGGCCGTGAAAGGTCTTTCAATCACTGCTGATGGAAATGGCGTTGTTTTTGATGTAGCAGCTAAAGATTTAGACATATATCTTAACGGTCAGGAAAATGCCTCGAATGTAAGTTTAGAGATAGTGAAAACATTGCCACAGTTGCAACAGATGGAGCAACACCAAAGAGGTGGCAGATTTGGTGATGGTGGTGGTCGTGGTTACCGGTTTGGTGGAAGAGGTGGAGGAGGCAGGAATGGTAGGTTCTCCAATGGTGGCGGAAGAGGTGGACGTGGCGGCAACTGGGGTGGAAAGAGATGTAGATATTTTGACAAGAAAAGAAGATACCACCCTGTTGCTGGCACGGTCATGCACCAAATGTTCAACTTTCATAGGCTGCTCGATTACATGATCGACCGTACAAACCAGAGGAAAACTTACAGGTTGCTTAGCTTCATCAGAACTGAGGTCTACACTGCAAACCCTGTTAATTTTGAGTATATCCTCACCACAAATTTCGCAAACTACGGCAAGGGTTGGTTTCACCATAGTGTCTTGTCAGATTTTCTAGGAGATAGTATATTCACGATGGATGGAGAGCAGTGGCGCCATCAGAGGAAGGCAGCAAGCTATCAATTCTCAACCAAAATGTTGAGAGAATTCAGCATTCAAGATTTGTTCATGAAAGCAACTCTAGATTCTGTATGCAAGGTTGTCCTTGGTGTTGAACTGGACACCGTGTGTGGAACCTATAAACAAGGCACAGAGTTCTCCAATGCTTTTGATGAAGTAAGTGCTGCTATCATGTATCGGTATTTTAAATTTCTCTGGAGGATTATACGGTTCTTGAACATTGGATCAGAAGTGGTACTTAACAAAAGTTTAAGAGTGATCGATGAATTCGTTTATGAACTAATCAGAACCAAGATTGAGCAAGCCCAAAAGCTACAAGATAATTCTCCTGTGAGAACAAAAACTGATCCAAAGTACCTTGGAGACATTTCCTTGAGTTTTATCCTTGCAGGGAAAGATACAATATCAGTTACTCTTTCCTGGTTTCTTTACGAACTTTGCAAGAACCCTCATGTGCAGGAGAAGATTGCACAAGAGATTAGACAGACAACAAATGTAGAAGCTGGATCAACCATTGATGAACTTGCAGCTAGAGTAACTGAAGAAAACAGGGAGAAGATGCAGTACCTGAATGCAGCATTGAATGAAACACTCAGGCTCCACCCAGCAGTTCCAGTGGAAGGCAAGTTTTGTTTTTCAGATGACACGTGGCCAGATCGATATAGTGTGAGGAAAGGTGATCTTGTGTCATTCCAACCATATTTCATGGGAAGGATGAAGAGAGTTGGCCAGATGAAAATGGAATTTTGA 3141 0.4387 MPSLSLSDPDTPKPIAKKKTKTQSLTDPDLDGVSGKKTKKRKASDLEQEAMPPAAYNNDGDDETSSDLVQPEPASREDDNKNKKKKKKKVVKSEEKEQPLVTEANGEKKEDPNALSNFRISEPLRQKLKEKGIESLFPIQAMTFDTVLDGSDLVGRARTGQGKTLAFVLPILESLINGPTKASRKTGFGRTPSVLVLLPTRELACQVHADFDVYGGAMGLSSCCLYGGAPYQGQEIKLRRGVDIVIGTPGRVKDHIEKGNIDLSQLKFRVLDEADEMLRMGFVEDVEMILGKVENVNKVQTLLFSATLPDWVKQIAARFLKPDKKTADLVGNTKMKASINVRHIVLPCTSSARAQLIPDIIRCYSSGGRTIVFTETKESASQLAGILTGAKALHGDIQQSTREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPKRSNISRIERESGVKFEHVSAPQPDDIAKAVSGEAAEMIIQVSDSVVPAFKSAAEDLLNNSGLPVIELLAKALAKAVGYTEVKQRSLLTSMENYVTLLLETGKPIYTQSFAYGVLRRFLPEEKVEAVKGLSITADGNGVVFDVAAKDLDIYLNGQENASNVSLEIVKTLPQLQQMEQHQRGGRFGDGGGRGYRFGGRGGGGRNGRFSNGGGRGGRGGNWGGKRCRYFDKKRRYHPVAGTVMHQMFNFHRLLDYMIDRTNQRKTYRLLSFIRTEVYTANPVNFEYILTTNFANYGKGWFHHSVLSDFLGDSIFTMDGEQWRHQRKAASYQFSTKMLREFSIQDLFMKATLDSVCKVVLGVELDTVCGTYKQGTEFSNAFDEVSAAIMYRYFKFLWRIIRFLNIGSEVVLNKSLRVIDEFVYELIRTKIEQAQKLQDNSPVRTKTDPKYLGDISLSFILAGKDTISVTLSWFLYELCKNPHVQEKIAQEIRQTTNVEAGSTIDELAARVTEENREKMQYLNAALNETLRLHPAVPVEGKFCFSDDTWPDRYSVRKGDLVSFQPYFMGRMKRVGQMKMEF 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01423 1046 SUPERFAMILY Cytochrome P450 702 1038 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma20g01423 1046 CDD SF2_C_DEAD 341 467 - -
Gma20g01423 1046 Gene3D Cytochrome P450 701 1046 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma20g01423 1046 SMART helicmild6 381 458 IPR001650 -
Gma20g01423 1046 Pfam Helicase conserved C-terminal domain 359 458 IPR001650 -
Gma20g01423 1046 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 675 - -
Gma20g01423 1046 Gene3D - 61 326 IPR027417 -
Gma20g01423 1046 MobiDBLite consensus disorder prediction 648 683 - -
Gma20g01423 1046 SUPERFAMILY RNA-binding domain, RBD 551 634 IPR035979 GO:0003676
Gma20g01423 1046 PRINTS P450 superfamily signature 927 944 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma20g01423 1046 PRINTS P450 superfamily signature 989 1000 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma20g01423 1046 PRINTS E-class P450 group IV signature 918 944 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma20g01423 1046 PRINTS E-class P450 group IV signature 984 1000 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma20g01423 1046 PRINTS E-class P450 group IV signature 1018 1032 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma20g01423 1046 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 27 675 - -
Gma20g01423 1046 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 471 IPR027417 -
Gma20g01423 1046 Pfam Cytochrome P450 806 1035 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma20g01423 1046 Gene3D - 565 636 - -
Gma20g01423 1046 CDD GUCT_RH7_like 554 639 - -
Gma20g01423 1046 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 326 IPR014001 -
Gma20g01423 1046 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 270 278 IPR000629 -
Gma20g01423 1046 Gene3D - 336 564 IPR027417 -
Gma20g01423 1046 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 355 497 IPR001650 -
Gma20g01423 1046 MobiDBLite consensus disorder prediction 32 47 - -
Gma20g01423 1046 CDD DEADc 124 321 - -
Gma20g01423 1046 MobiDBLite consensus disorder prediction 91 115 - -
Gma20g01423 1046 Pfam DEAD/DEAH box helicase 137 314 IPR011545 GO:0003676|GO:0005524
Gma20g01423 1046 Coils Coil 969 989 - -
Gma20g01423 1046 SMART ultradead3 132 344 IPR014001 -
Gma20g01423 1046 MobiDBLite consensus disorder prediction 1 118 - -
Gma20g01423 1046 Pfam GUCT (NUC152) domain 547 642 IPR012562 GO:0003723|GO:0004386|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01423 Gma-Chr20 41353491 41360877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01423 700 1046 Cytochrome P450 AT2G45510 43.333 9.52e-87 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01423 K16911 - gmx:100820207 1234.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01423 20 41353491 41360877 Gma20g01423 20 41353491 41360877 ECH