Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01396 ATGGCCGTCGGAAAGAACAAGCGCATCTCCAAAGGGAAAAAGGGTGGCAAGAAGAAGGCAGCTGATCCCTTTGCCAAGAAGGATTGGTATGACATTAAGGCCCCTTCTCTTTTTCAAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGATCTTCAAGGGGATGAGGATCATGCATTCAAGAAGATTAGGTTGAGAGCTGAAGATGTGCAAGGGAAGAATGTCCTGACAAATTTCTGGGGAATGGATTTCACAACTGACAAGCTGAGGTCATTGGTGCGAAAATGGCAAACTCTAATTGAAGCCCATGTGGATGTGAAGACAACTGATAACTACACATTGAGGATGTTTTGCATTGGATTTACCAAGAGAAGAGCTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGATTTGAAGGAGTTGGTCCGCAAGTTTATTCCTGAGATTATTGGAAAAGAGATTGAGAAGGCGACATCTAGTATTTACCCTCTGCAGAATGTGTTTGTTCGTAAAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCTGATGAAATAGTGGCAGAGGAACCCACTGAAATTGTTGGAGCTTGA 786 0.4427 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSLFQVKNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEDHAFKKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMREIMTNQATSCDLKELVRKFIPEIIGKEIEKATSSIYPLQNVFVRKVKILKAPKFDLGKLMEVHGDYSEDVGAKVDRPADEIVAEEPTEIVGA 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01396 261 Pfam Ribosomal S3Ae family 16 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Gma20g01396 261 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 261 - -
Gma20g01396 261 MobiDBLite consensus disorder prediction 1 20 - -
Gma20g01396 261 MobiDBLite consensus disorder prediction 1 15 - -
Gma20g01396 261 ProSitePatterns Ribosomal protein S3Ae signature. 61 73 IPR018281 GO:0003735|GO:0005840|GO:0006412
Gma20g01396 261 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 261 - -
Gma20g01396 261 Hamap 40S ribosomal protein S1 [RPS3A]. 1 258 IPR027500 GO:0003735|GO:0005840|GO:0006412
Gma20g01396 261 SMART Ribosomal_S3Ae_2 15 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01396 Gma-Chr20 41035119 41037809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01396 1 261 Cytoplasmic Ribosomal Protein Gene Family AT3G04840 85.878 3.13e-165 456
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02319 10 50810752 50812916 Gma20g01396 20 41035119 41037809 GST